The NewGuide Project: Guidelines, Information Sharing and Learning from Exceptions. - Paolo Ciccarese; Ezio Caffi; Lorenzo Boiocchi; Assaf Halevy; Silvana Quaglini; Anand Kumar; Mario Stefanelli (AIME, 2003)

Relating UMLS semantic types and task-based ontology to computer-interpretable clinical practice guidelines. - Anand Kumar; Paolo Ciccarese; Silvana Quaglini; Mario Stefanelli; Ezio Caffi; Lorenzo Boiocchi (MIE, 2003)

Research Paper: Comparing Computer-interpretable Guideline Models: A Case-study Approach. - Mor Peleg; Samson W. Tu; Jonathan Bury; Paolo Ciccarese; John Fox 001; Robert A. Greenes; Richard W. Hall; Peter D. Johnson 001; Neill Jones; Anand Kumar; Silvia Miksch; Silvana Quaglini; et al. (J. Am. Medical Informatics Assoc., 2003)

Non-Compliance with Guidelines: Motivations and Consequences in a case study. - Silvana Quaglini; Paolo Ciccarese; Giuseppe Micieli; Anna Cavallini (CGP, 2004)

A Guideline Management System. - Paolo Ciccarese; Ezio Caffi; Lorenzo Boiocchi; Silvana Quaglini; Mario Stefanelli (MedInfo, 2004)

Architectures and tools for innovative Health Information Systems: The Guide Project. - Paolo Ciccarese; Ezio Caffi; Silvana Quaglini; Mario Stefanelli (Int. J. Medical Informatics, 2005)

A Framework for Temporal Data Processing and Abstractions. - Paolo Ciccarese; Cristiana Larizza (AMIA, 2006)

The SWAN biomedical discourse ontology. - Paolo Ciccarese; Elizabeth Wu; Gwendolyn T. Wong; Marco Ocana; June Kinoshita; Alan Ruttenberg; Tim Clark (J. Biomed. Informatics, 2008)

An open annotation ontology for science on web 3.0. - Paolo Ciccarese; Marco Ocana; Leyla Jael García Castro; Sudeshna Das 001; Tim Clark (J. Biomed. Semant., 2011)

A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework. - Anita E. Bandrowski; Jonathan Cachat; Yuling Li 005; Hans-Michael Müller; Paul W. Sternberg; Paolo Ciccarese; Tim Clark; Luis N. Marenco; Rixin Wang; Vadim Astakhov; Jeffrey S. Grethe; Maryann E. Martone (Database J. Biol. Databases Curation, 2012)

Open semantic annotation of scientific publications using DOMEO. - Paolo Ciccarese; Marco Ocana; Tim Clark (J. Biomed. Semant., 2012)

Designing the W3C open annotation data model. - Robert Sanderson; Paolo Ciccarese; Herbert Van de Sompel (WebSci, 2013)

BioC: a minimalist approach to interoperability for biomedical text processing. - Donald C. Comeau; Rezarta Islamaj Dogan; Paolo Ciccarese; Kevin Bretonnel Cohen; Martin Krallinger; Florian Leitner; Zhiyong Lu; Yifan Peng 002; Fabio Rinaldi 001; Manabu Torii; Alfonso Valencia; Karin Verspoor; et al. (Database J. Biol. Databases Curation, 2013)

PAV ontology: provenance, authoring and versioning. - Paolo Ciccarese; Stian Soiland-Reyes; Khalid Belhajjame; Alasdair J. G. Gray; Carole A. Goble; Tim Clark (J. Biomed. Semant., 2013)

Web Annotation as a First-Class Object. - Paolo Ciccarese; Stian Soiland-Reyes; Tim Clark (IEEE Internet Comput., 2013)

Using the Micropublications Ontology and the Open Annotation Data Model to Represent Evidence within a Drug-Drug Interaction Knowledge Base. - Jodi Schneider; Paolo Ciccarese; Tim Clark; Richard D. Boyce (LISC@ISWC, 2014)

Annotopia: An Open Source Universal Annotation Server for Biomedical Research. - Paolo Ciccarese; Tim Clark (SWAT4LS, 2014)

Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications. - Tim Clark; Paolo Ciccarese; Carole A. Goble (J. Biomed. Semant., 2014)

Semantic Web repositories for genomics data using the eXframe platform. - Emily Merrill; Stephane Corlosquet; Paolo Ciccarese; Tim Clark; Sudeshna Das 001 (J. Biomed. Semant., 2014)

The Collections Ontology: Creating and handling collections in OWL 2 DL frameworks. - Paolo Ciccarese; Silvio Peroni (Semantic Web, 2014)

CiTO + SWAN: The web semantics of bibliographic records, citations, evidence and discourse relationships. - Paolo Ciccarese; David M. Shotton; Silvio Peroni; Tim Clark (Semantic Web, 2014)

BIM: an open ontology for the annotation of biomedical images. - Ahmad C. Bukhari; Mate Levente Nagy; Michael Krauthammer; Paolo Ciccarese; Christopher J. O. Baker (ICBO, 2015)

Formalizing Knowledge and Evidence about Potential Drug-drug Interactions. - Jodi Schneider; Mathias Brochhausen; Samuel Rosko; Paolo Ciccarese; William R. Hogan; Daniel C. Malone; Yifan Ning; Tim Clark; Richard D. Boyce (BDM2I@ISWC, 2015)

iCyrus: A Semantic Framework for Biomedical Image Discovery. - Syed Ahmad Chan Bukhari; Mate Levente Nagy; Paolo Ciccarese; Michael Krauthammer; Christopher J. O. Baker (SWAT4LS, 2015)

Interoperability and FAIRness through a novel combination of Web technologies. - Mark D. Wilkinson; Ruben Verborgh; Luiz Olavo Bonino da Silva Santos; Tim Clark; Morris A. Swertz; Fleur D. L. Kelpin; Alasdair J. G. Gray; Erik A. Schultes; Erik M. van Mulligen; Paolo Ciccarese; Mark Thompson 002; Rajaram Kaliyaperumal; et al. (PeerJ Prepr., 2016)

Interoperability and FAIRness through a novel combination of Web technologies. - Mark D. Wilkinson; Ruben Verborgh; Luiz Olavo Bonino da Silva Santos; Tim Clark; Morris A. Swertz; Fleur D. L. Kelpin; Alasdair J. G. Gray; Erik A. Schultes; Erik M. van Mulligen; Paolo Ciccarese; Arnold Kuzniar; Anand K. Gavai; et al. (PeerJ Prepr., 2017)