Correlating overrepresented upstream motifs to gene expression: a computational approach to regulatory element discovery in eukaryotes. - Michele Caselle; Ferdinando Di Cunto; Paolo Provero (BMC Bioinform., 2002)

Computational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrep-resented upstream motifs. - Davide Corà; Ferdinando Di Cunto; Paolo Provero; Lorenzo Silengo; Michele Caselle (BMC Bioinform., 2004)

CLOE: Identification of putative functional relationships among genes by comparison of expression profiles between two species. - Maurizio Pellegrino; Paolo Provero; Lorenzo Silengo; Ferdinando Di Cunto (BMC Bioinform., 2004)

Ab initio identification of putative human transcription factor binding sites by comparative genomics. - Davide Corà; Carl Herrmann; Christoph Dieterich; Ferdinando Di Cunto; Paolo Provero; Michele Caselle (BMC Bioinform., 2005)

Identification of candidate regulatory sequences in mammalian 3' UTRs by statistical analysis of oligonucleotide distributions. - Davide Corà; Ferdinando Di Cunto; Michele Caselle; Paolo Provero (BMC Bioinform., 2007)

Prediction of Human Disease Genes by Human-Mouse Conserved Coexpression Analysis. - Ugo Ala; Rosario Michael Piro; Elena Grassi; Christian Damasco; Lorenzo Silengo; Martin Oti; Paolo Provero; Ferdinando Di Cunto (PLoS Comput. Biol., 2008)

Are Cells Really Operating at the Edge of Chaos? - A Case Study of Two Real-Life Regulatory Networks. - Christian Darabos; Mario Giacobini; Marco Tomassini; Paolo Provero; Ferdinando Di Cunto (ECAL (1), 2009)

Identification of Individualized Feature Combinations for Survival Prediction in Breast Cancer: A Comparison of Machine Learning Techniques. - Leonardo Vanneschi; Antonella Farinaccio; Mario Giacobini; Giancarlo Mauri; Marco Antoniotti; Paolo Provero (EvoBIO, 2010)

On the use of genetic programming for the prediction of survival in cancer. - Antonella Farinaccio; Leonardo Vanneschi; Mario Giacobini; Giancarlo Mauri; Paolo Provero (GECCO, 2010)

A Study on Gene Regulatory Network Reconstruction and Simulation. - Antonella Farinaccio; Leonardo Vanneschi; Paolo Provero; Giancarlo Mauri; Mario Giacobini (WIRN, 2010)

Candidate gene prioritization based on spatially mapped gene expression: an application to XLMR. - Rosario Michael Piro; Ivan Molineris; Ugo Ala; Paolo Provero; Ferdinando Di Cunto (Bioinform., 2010)

Validating a Threshold-Based Boolean Model of Regulatory Networks on a Biological Organism. - Christian Darabos; Ferdinando Di Cunto; Marco Tomassini; Jason H. Moore; Paolo Provero; Mario Giacobini (EvoBio, 2011)

A New Evolutionary Gene Regulatory Network Reverse Engineering Tool. - Antonella Farinaccio; Leonardo Vanneschi; Paolo Provero; Giancarlo Mauri; Mario Giacobini (EvoBio, 2011)

A comparison of machine learning techniques for survival prediction in breast cancer. - Leonardo Vanneschi; Antonella Farinaccio; Giancarlo Mauri; Marco Antoniotti; Paolo Provero; Mario Giacobini (BioData Min., 2011)

Toward robust network based complex systems: from evolutionary cellular automata to biological models. - Christian Darabos; Marco Tomassini; Ferdinando Di Cunto; Paolo Provero; Jason H. Moore; Mario Giacobini (Intelligenza Artificiale, 2011)

Drug repositioning for orphan genetic diseases through Conserved Anticoexpressed Gene Clusters (CAGCs). - Ivan Molineris; Ugo Ala; Paolo Provero; Ferdinando Di Cunto (BMC Bioinform., 2013)

Towards the Use of Genetic Programming for the Prediction of Survival in Cancer. - Mario Giacobini; Paolo Provero; Leonardo Vanneschi; Giancarlo Mauri (Evolution, Complexity and Artificial Life, 2014)

The BioMart community portal: an innovative alternative to large, centralized data repositories. - Damian Smedley; Syed Haider; Steffen Durinck; Luca Pandini; Paolo Provero; James E. Allen; Olivier Arnaiz; Mohammad Hamza Awedh; Richard A. Baldock; Giulia Barbiera; Philippe Bardou; Tim Beck; et al. (Nucleic Acids Res., 2015)

Roar: detecting alternative polyadenylation with standard mRNA sequencing libraries. - Elena Grassi; Elisa Mariella; Antonio Lembo; Ivan Molineris; Paolo Provero (BMC Bioinform., 2016)

In silico prediction of lncRNA function using tissue specific and evolutionary conserved expression. - Umberto Perron; Paolo Provero; Ivan Molineris (BMC Bioinform., 2017)