Faster exact Markovian probability functions for motif occurrences: a DFA-only approach. - Paolo Ribeca; Emanuele Raineri (Bioinform., 2008)

A more precise characterization of chaperonin substrates. - Emanuele Raineri; Paolo Ribeca; Luis Serrano; Tobias Maier (Bioinform., 2010)

Computational challenges of sequence classification in microbiomic data. - Paolo Ribeca; Gabriel Valiente (Briefings Bioinform., 2011)

Thread-cooperative, bit-parallel computation of levenshtein distance on GPU. - Alejandro Chacón; Santiago Marco-Sola; Antonio Espinosa 001; Paolo Ribeca; Juan Carlos Moure (ICS, 2014)

FM-Index on GPU: A Cooperative Scheme to Reduce Memory Footprint. - Alejandro Chacón; Santiago Marco-Sola; Antonio Espinosa 001; Paolo Ribeca; Juan Carlos Moure (ISPA, 2014)

CARGO: Effective format-free compressed storage of genomic information. - Lukasz Roguski; Paolo Ribeca (CoRR, 2015)

Boosting the FM-Index on the GPU: Effective Techniques to Mitigate Random Memory Access. - Alejandro Chacón; Santiago Marco-Sola; Antonio Espinosa 001; Paolo Ribeca; Juan Carlos Moure (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Networks of Ethereum Non-Fungible Tokens: A graph-based analysis of the ERC-721 ecosystem. - Simone Casale-Brunet; Paolo Ribeca; P. Doyle; Marco Mattavelli (Blockchain, 2021)

A Benchmark of Entropy Coders for the Compression of Genome Sequencing Data. - Simone Casale-Brunet; Paolo Ribeca; Claudio Alberti; Unsal Ozturk; Marco Mattavelli (DCC, 2022)

MPEG-G Reference-Based Compression of Unaligned Reads Through Ultra-Fast Alignments. - Unsal Ozturk; Simone Casale-Brunet; Paolo Ribeca; Marco Mattavelli (DCC, 2022)

FM-Directories: Extending the Burrows-Wheeler Transform for String Labeled Vertex Graphs of (Almost) Arbitrary Topology. - Unsal Ozturk; Paolo Ribeca; Marco Mattavelli (DCC, 2023)

Scaling a Variant Calling Genomics Pipeline with FaaS. - Aitor Arjona; Arnau Gabriel-Atienza; Sara Lanuza-Orna; Xavier Roca-Canals; Ayman Bourramouss; Tyler K. Chafin; Lucio Marcello; Paolo Ribeca; Pedro García López (WOSC@Middleware, 2023)

Distinguishing imported cases from locally acquired cases within a geographically limited genomic sample of an infectious disease. - Xavier Didelot; David Helekal; Michelle Kendall; Paolo Ribeca (Bioinform., 2023)

Efficient Neural Clustering and Compression of Strings Through Approximate Euclidean Embeddings of the Levenshtein Distance. - Ünsal Öztürk; Utku Görkem Ertürk; Simone Casale-Brunet; Paolo Ribeca; Marco Mattavelli (DCC, 2024)