A Protein Classification Benchmark collection for machine learning. - Paolo Sonego; Mircea Pacurar; Somdutta Dhir; Attila Kertész-Farkas; András Kocsor; Zoltán Gáspári; Jack A. M. Leunissen; Sándor Pongor (Nucleic Acids Res., 2007)

ROC analysis: applications to the classification of biological sequences and 3D structures. - Paolo Sonego; András Kocsor; Sándor Pongor (Briefings Bioinform., 2008)

COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia. - Pieter Meysman; Paolo Sonego; Luca Bianco; Qiang Fu 009; Daniela Ledezma-Tejeida; Socorro Gama-Castro; Veerle Liebens; Jan Michiels; Kris Laukens; Kathleen Marchal; Julio Collado-Vides; Kristof Engelen (Nucleic Acids Res., 2014)

COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses. - Marco Moretto; Paolo Sonego; Nicolas Dierckxsens; Matteo Brilli; Luca Bianco; Daniela Ledezma-Tejeida; Socorro Gama-Castro; Marco Galardini; Chiara Romualdi; Kris Laukens; Julio Collado-Vides; Pieter Meysman; et al. (Nucleic Acids Res., 2016)

First step toward gene expression data integration: transcriptomic data acquisition with COMMAND>_. - Marco Moretto; Paolo Sonego; Ana B. Villaseñor-Altamirano; Kristof Engelen (BMC Bioinform., 2019)