JASPAR: an open-access database for eukaryotic transcription factor binding profiles. - Albin Sandelin; Wynand Alkema; Pär G. Engström; Wyeth W. Wasserman; Boris Lenhard (Nucleic Acids Res., 2004)

RNAdb - a comprehensive mammalian noncoding RNA database. - Ken C. Pang; Stuart Stephen; Pär G. Engström; Khairina Tajul-Arifin; Weisan Chen; Claes Wahlestedt; Boris Lenhard; Yoshihide Hayashizaki; John S. Mattick (Nucleic Acids Res., 2005)

RNAdb 2.0 - an expanded database of mammalian non-coding RNAs. - Ken C. Pang; Stuart Stephen; Marcel E. Dinger; Pär G. Engström; Boris Lenhard; John S. Mattick (Nucleic Acids Res., 2007)

In Silico Detection of Sequence Variations Modifying Transcriptional Regulation. - Malin C. Andersen; Pär G. Engström; Stuart Lithwick; David J. Arenillas; Per Eriksson; Boris Lenhard; Wyeth W. Wasserman; Jacob Odeberg (PLoS Comput. Biol., 2008)