A phylogenomic gene cluster resource: the Phylogenetically Inferred Groups (PhIGs) database. - Paramvir S. Dehal; Jeffrey L. Boore (BMC Bioinform., 2006)

Orthologous Transcription Factors in Bacteria Have Different Functions and Regulate Different Genes. - Morgan N. Price; Paramvir S. Dehal; Adam P. Arkin (PLoS Comput. Biol., 2007)

MicrobesOnline: an integrated portal for comparative and functional genomics. - Paramvir S. Dehal; Marcin P. Joachimiak; Morgan N. Price; John T. Bates; Jason K. Baumohl; Dylan Chivian; Greg D. Friedland; Katherine H. Huang; Keith Keller; Pavel S. Novichkov; Inna Dubchak; Eric J. Alm; et al. (Nucleic Acids Res., 2010)

RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics. - Pavel S. Novichkov; Thomas S. Brettin; Elena S. Novichkova; Paramvir S. Dehal; Adam P. Arkin; Inna Dubchak; Dmitry A. Rodionov (Nucleic Acids Res., 2012)

metaMicrobesOnline: phylogenomic analysis of microbial communities. - Dylan Chivian; Paramvir S. Dehal; Keith Keller; Adam P. Arkin (Nucleic Acids Res., 2013)