Engineering Life through Synthetic Biology. - Paras Chopra; Akhil Kamma (Silico Biol., 2006)

Evolved Cellular Automata for Protein Secondary Structure Prediction Imitate the Determinants for Folding Observed in Nature. - Paras Chopra; Andreas Bender (Silico Biol., 2007)

A Quantitative bgl Operon Model for E. coli Requires BglF Conformational Change for Sugar Transport. - Paras Chopra; Andreas Bender (Trans. Comp. Sys. Biology, 2008)

IPO: Your Language Model is Secretly a Preference Classifier. - Shivank Garg; Ayush Singh; Shweta Singh; Paras Chopra (ACL (1), 2025)

Do GFlowNets Transfer? Case Study on the Game of 24/42. - Adesh Gupta; Abhinav Kumar; Mansi Gupta; Paras Chopra (CoRR, 2025)