Network Elucidation Template: A framework for human-guided network inference. - Leo Lopes; Jay Konieczka; Victor Foulk; Parker B. Antin (Comput. Ind. Eng., 2010)

GEISHA: an evolving gene expression resource for the chicken embryo. - Parker B. Antin; Tatiana A. Yatskievych; Sean Davey; Diana K. Darnell (Nucleic Acids Res., 2014)

CyVerse: Cyberinfrastructure for open science. - Tyson L. Swetnam; Parker B. Antin; Ryan Bartelme; Alexander Bucksch; David Camhy; Greg Chism; Illyoung Choi; Amanda M. Cooksey; Michele Cosi; Cindy Cowen; Michael Culshaw-Maurer; Robert Davey; et al. (PLoS Comput. Biol., 2024)