Multi-Feature Analysis and Classification of Human Chromosome Images Using Centromere Segmentation Algorithms. - Parvin Mousavi; Rabab Kreidieh Ward; Peter M. Lansdorp; Sidney S. Fels (ICIP, 2000)

Classification of homologous human chromosomes using mutual information maximization. - Parvin Mousavi; Sidney S. Fels; Rabab Kreidieh Ward; Peter M. Lansdorp (ICIP (2), 2001)

Feature analysis and centromere segmentation of human chromosome images using an iterative fuzzy algorithm. - Parvin Mousavi; Rabab Kreidieh Ward; Sidney S. Fels; Mohammad Sameti; Peter M. Lansdorp (IEEE Trans. Biomed. Eng., 2002)

Genetic network inference via gene set stochastic sampling and sensitivity analysis. - Simon Knott; Sayyed Mostafa Mostafavi; Parvin Mousavi; Janice I. Glasgow (CCA, 2005)

Discovery of Gene Expression Patterns across Multiple Cancer Types. - Cheryl Chan; Parvin Mousavi (BIBE, 2005)

A Systematic Approach for Identifying Regulatory Interactions in Large Temporal Gene Expression Datasets from Peripheral Blood. - Simon Knott; Parvin Mousavi; Sergio Baranzini (CIBCB, 2006)

A Fast Multivariate Feature-Selection/Classification Approach for Prediction of Therapy Response in Multiple Sclerosis. - Sara Mostafavi; Sergio Baranzini; Jorge Oksenberg; Parvin Mousavi (CIBCB, 2006)

A Neural Network Based Approach for Inference and Verification of Transcriptional Regulatory Interactions. - Simon Knott; Sara Mostafavi; Parvin Mousavi (EMBC, 2006)

Detection of Prostate Cancer from RF Ultrasound Echo Signals Using Fractal Analysis. - Mehdi Moradi; Purang Abolmaesumi; Phillip A. Isotalo; Robert Siemens; Eric Sauerbrei; Parvin Mousavi (EMBC, 2006)

Predictive modeling of therapy response in multiple sclerosis using gene expression data. - Sara Mostafavi; Sergio Baranzini; Jorge Oksernberg; Parvin Mousavi (EMBC, 2006)

Identification of Anatomical Landmarks for Registration of CT and Ultrasound Images in Computer-Assisted Shoulder Arthroscopy. - Kathrin Tyryshkin; Parvin Mousavi; David R. Pichora; Purang Abolmaesumi (EMBC, 2006)

Deformable registration using scale space keypoints. - Mehdi Moradi; Purang Abolmaesumi; Parvin Mousavi (Image Processing, 2006)

Tissue Characterization Using Fractal Dimension of High Frequency Ultrasound RF Time Series. - Mehdi Moradi; Parvin Mousavi; Purang Abolmaesumi (MICCAI (2), 2007)

Reverse engineering time series of gene expression data using Dynamic Bayesian networks and covariance matrix adaptation evolution strategy with explicit memory. - Maryam Salehi; Alan Ableson; Parvin Mousavi (CIBCB, 2008)

Reverse engineering of the transcriptional subnetwork in the yeast cell cycle pathway using Dynamic Bayesian Networks and evolutionary search. - Maryam Salehi; Paul G. Young; Parvin Mousavi (CIBCB, 2008)

Prostate Cancer Probability Maps Based on Ultrasound RF Time Series and SVM Classifiers. - Mehdi Moradi; Parvin Mousavi; Robert Siemens; Eric Sauerbrei; Alexander Boag; Purang Abolmaesumi (MICCAI (1), 2008)

A New Scheme for Curved Needle Segmentation in Three-Dimensional Ultrasound Images. - Mohammad Aboofazeli; Purang Abolmaesumi; Parvin Mousavi; Gabor Fichtinger (ISBI, 2009)

Automated detection of prostate cancer using wavelet transform features of ultrasound RF time series. - Mohammad Aboofazeli; Purang Abolmaesumi; Mehdi Moradi; Eric Sauerbrei; Robert Siemens; Alexander Boag; Parvin Mousavi (Computer-Aided Diagnosis, 2009)

Biomechanically Constrained Groupwise US to CT Registration of the Lumbar Spine. - Sean Gill; Parvin Mousavi; Gabor Fichtinger; Elvis C. S. Chen; Jonathan Boisvert; David R. Pichora; Purang Abolmaesumi (MICCAI (1), 2009)

Group-wise registration of ultrasound to CT images of human vertebrae. - Sean Gill; Parvin Mousavi; Gabor Fichtinger; David R. Pichora; Purang Abolmaesumi (Image-Guided Procedures, 2009)

Probabilistic pairwise Markov models: application to prostate cancer detection. - James Monaco; John Tomaszewski 001; Michael D. Feldman; Mehdi Moradi; Parvin Mousavi; Alexander Boag; Chris Davidson; Purang Abolmaesumi; Anant Madabhushi (Image Processing, 2009)

Registration of a Statistical Shape Model of the Lumbar Spine to 3D Ultrasound Images. - Siavash Khallaghi; Parvin Mousavi; Ren Hui Gong; Sean Gill; Jonathan Boisvert; Gabor Fichtinger; David R. Pichora; Dan P. Borschneck; Purang Abolmaesumi (MICCAI (2), 2010)

Ultrasound guided spine needle insertion. - Elvis C. S. Chen; Parvin Mousavi; Sean Gill; Gabor Fichtinger; Purang Abolmaesumi (Image-Guided Procedures, 2010)

Multi-slice to volume registration of ultrasound data to a statistical atlas of human pelvis. - Sahar Ghanavati; Parvin Mousavi; Gabor Fichtinger; Pezhman Foroughi; Purang Abolmaesumi (Image-Guided Procedures, 2010)

Group-wise feature-based registration of CT and ultrasound images of spine. - Abtin Rasoulian; Parvin Mousavi; Mehdi Hedjazi Moghari; Pezhman Foroughi; Purang Abolmaesumi (Image-Guided Procedures, 2010)

A neural network based modeling and validation approach for identifying gene regulatory networks. - Simon Knott; Sara Mostafavi; Parvin Mousavi (Neurocomputing, 2010)

High-throughput detection of prostate cancer in histological sections using probabilistic pairwise Markov models. - James Monaco; John Tomaszewski 001; Michael D. Feldman; Ian S. Hagemann; Mehdi Moradi; Parvin Mousavi; Alexander Boag; Chris Davidson; Purang Abolmaesumi; Anant Madabhushi (Medical Image Anal., 2010)

Reverse engineering of gene regulatory networks: A systems approach. - Zhen Wang; Parvin Mousavi (CIBCB, 2011)

Joint angle-based EMG amplitude calibration. - Javad Hashemi; Evelyn Morin; Parvin Mousavi; Keyvan Hashtrudi-Zaad (EMBC, 2011)

Towards an augmented ultrasound guided spinal needle insertion system. - Colin J. Sutherland; Keyvan Hashtrudi-Zaad; Purang Abolmaesumi; Parvin Mousavi (EMBC, 2011)

Biomechanically Constrained Groupwise Statistical Shape Model to Ultrasound Registration of the Lumbar Spine. - Siavash Khallaghi; Parvin Mousavi; Dan P. Borschneck; Gabor Fichtinger; Purang Abolmaesumi (IPCAI, 2011)

Monitoring of Tissue Ablation Using Time Series of Ultrasound RF Data. - Farhad Imani; Mark Z. Wu; Andras Lasso; Everette Clif Burdette; Mohammad I. Daoud; Gabor Fitchinger; Purang Abolmaesumi; Parvin Mousavi (MICCAI (1), 2011)

SimITK: rapid ITK prototyping using the Simulink visual programming environment. - Andrew W. L. Dickinson; Parvin Mousavi; David G. Gobbi; Purang Abolmaesumi (Image-Guided Procedures, 2011)

Phantom validation for ultrasound to statistical shape model registration of human pelvis. - Sahar Ghanavati; Parvin Mousavi; Gabor Fichtinger; Purang Abolmaesumi (Image-Guided Procedures, 2011)

GPU accelerated registration of a statistical shape model of the lumbar spine to 3D ultrasound images. - Siavash Khallaghi; Purang Abolmaesumi; Ren Hui Gong; Elvis C. S. Chen; Sean Gill; Jonathan Boisvert; David R. Pichora; Dan P. Borschneck; Gabor Fichtinger; Parvin Mousavi (Image-Guided Procedures, 2011)

iCTNet: A Cytoscape plugin to produce and analyze integrative complex traits networks. - Lili Wang 005; Pouya Khankhanian; Sergio Baranzini; Parvin Mousavi (BMC Bioinform., 2011)

Enhanced multi-site EMG-force estimation using contact pressure. - Javad Hashemi; Evelyn Morin; Parvin Mousavi; Keyvan Hashtrudi-Zaad (EMBC, 2012)

Biomechanically constrained groupwise ultrasound to CT registration of the lumbar spine. - Sean Gill; Purang Abolmaesumi; Gabor Fichtinger; Jonathan Boisvert; David R. Pichora; Dan P. Borschneck; Parvin Mousavi (Medical Image Anal., 2012)

Multi-modal registration of speckle-tracked freehand 3D ultrasound to CT in the lumbar spine. - Andrew Lang; Parvin Mousavi; Sean Gill; Gabor Fichtinger; Purang Abolmaesumi (Medical Image Anal., 2012)

Spinal Needle Navigation by Tracked Ultrasound Snapshots. - Tamas Ungi; Purang Abolmaesumi; Rayhan Jalal; Mattea Welch; Irene Ayukawa; Simrin Nagpal; Andras Lasso; Melanie Jaeger; Daniel P. Borschneck; Gabor Fichtinger; Parvin Mousavi (IEEE Trans. Biomed. Eng., 2012)

Prediction of stroke-related diagnostic and prognostic measures using robot-based evaluation. - Sayyed Mostafa Mostafavi; Janice I. Glasgow; Sean P. Dukelow; Stephen H. Scott; Parvin Mousavi (ICORR, 2013)

Ultrasound-Based Characterization of Prostate Cancer: An in vivo Clinical Feasibility Study. - Farhad Imani; Purang Abolmaesumi; Eli Gibson; Amir Khojaste; Mena Gaed; Madeleine Moussa; Jose A. Gomez; Cesare Romagnoli; Robert Siemens; Michael Leveridge; Silvia D. Chang; Aaron Fenster; et al. (MICCAI (2), 2013)

Experimental assessment of error in an electromagnetically-tracked ultrasound-guided needle navigation system. - Irene Ayukawa; Tamas Ungi; Keyvan Hashtrudi-Zaad; Gabor Fichtinger; Parvin Mousavi (Image-Guided Procedures, 2013)

Tissue Classification Using Ultrasound-Induced Variations in Acoustic Backscattering Features. - Mohammad I. Daoud; Parvin Mousavi; Farhad Imani; Robert Rohling; Purang Abolmaesumi (IEEE Trans. Biomed. Eng., 2013)

Ultrasound-Guided Characterization of Interstitial Ablated Tissue Using RF Time Series: Feasibility Study. - Farhad Imani; Purang Abolmaesumi; Mark Z. Wu; Andras Lasso; Everette Clif Burdette; Goutam Ghoshal; Tamas Heffter; Emery Williams; Paul Neubauer; Gabor Fichtinger; Parvin Mousavi (IEEE Trans. Biomed. Eng., 2013)

An Augmented Reality Haptic Training Simulator for Spinal Needle Procedures. - Colin J. Sutherland; Keyvan Hashtrudi-Zaad; Richard W. Sellens; Purang Abolmaesumi; Parvin Mousavi (IEEE Trans. Biomed. Eng., 2013)

Reduction of stroke assessment time for visually guided reaching task on KINARM exoskeleton robot. - Sayyed Mostafa Mostafavi; Sean P. Dukelow; Janice I. Glasgow; Stephen H. Scott; Parvin Mousavi (EMBC, 2014)

Hierarchical task ordering for time reduction on KINARM assessment protocol. - Sayyed Mostafa Mostafavi; Sean P. Dukelow; Stephen H. Scott; Parvin Mousavi (EMBC, 2014)

CT to US Registration of the Lumbar Spine: A Clinical Feasibility Study. - Simrin Nagpal; Purang Abolmaesumi; Abtin Rasoulian; Tamas Ungi; Ilker Hacihaliloglu; Jill Osborn; Dan P. Borschneck; Victoria A. Lessoway; Robert Rohling; Parvin Mousavi (IPCAI, 2014)

Ultrasound-Based Predication of Prostate Cancer in MRI-guided Biopsy. - Nishant Uniyal; Farhad Imani; Amir M. Tahmasebi; Harsh K. Agarwal; Shyam Bharat; Pingkun Yan; Jochen Kruecker; Jin Tae Kwak; Sheng Xu 001; Bradford J. Wood; Peter A. Pinto; Baris Turkbey; et al. (CLIP@MICCAI, 2014)

A global CT to US registration of the lumbar spine. - Simrin Nagpal; Ilker Hacihaliloglu; Tamas Ungi; Abtin Rasoulian; Jill Osborn; Victoria A. Lessoway; Robert N. Rohling; Daniel P. Borschneck; Purang Abolmaesumi; Parvin Mousavi (Image-Guided Procedures, 2014)

SimITK: model driven engineering for medical imaging. - Melissa Trezise; David G. Gobbi; James Cordy; Purang Abolmaesumi; Parvin Mousavi (Image-Guided Procedures, 2014)

SimITK: Visual Programming of the ITK Image-Processing Library within Simulink. - Andrew W. L. Dickinson; Purang Abolmaesumi; David G. Gobbi; Parvin Mousavi (J. Digit. Imaging, 2014)

Using Hidden Markov Models to capture temporal aspects of ultrasound data in prostate cancer. - Layan Nahlawi; Farhad Imani; Mena Gaed; Jose A. Gomez; Madeleine Moussa; Eli Gibson; Aaron Fenster; Aaron D. Ward; Purang Abolmaesumi; Parvin Mousavi; Hagit Shatkay (BIBM, 2015)

Characterization of aggressive prostate cancer using ultrasound RF time series. - Amir Khojaste; Farhad Imani; Mehdi Moradi; David M. Berman; D. Robert Siemens; Eric E. Sauerberi; Alexander H. Boag; Purang Abolmaesumi; Parvin Mousavi (Computer-Aided Diagnosis, 2015)

Ultrasound-Based Detection of Prostate Cancer Using Automatic Feature Selection with Deep Belief Networks. - Shekoofeh Azizi; Farhad Imani; Bo Zhuang; Amir M. Tahmasebi; Jin Tae Kwak; Sheng Xu 001; Nishant Uniyal; Baris Turkbey; Peter L. Choyke; Peter A. Pinto; Bradford J. Wood; Mehdi Moradi; et al. (MICCAI (2), 2015)

Scaphoid fracture fixation: localization of bones through statistical model to ultrasound registration. - Emran Mohammad Abu Anas; Abtin Rasoulian; Paul St. John; David R. Pichora; Parvin Mousavi; Victoria A. Lessoway; Alexander Seitel; Ilker Hacihaliloglu; Robert Rohling; Purang Abolmaesumi (Image-Guided Procedures, 2015)

iPINBPA: An Integrative Network-Based Functional Module Discovery Tool for Genome-Wide Association Studies. - Lili Wang 005; Parvin Mousavi; Sergio Baranzini (Pacific Symposium on Biocomputing, 2015)

PINBPA: Cytoscape app for network analysis of GWAS data. - Lili Wang 005; Takuya Matsushita; Lohith Madireddy; Parvin Mousavi; Sergio Baranzini (Bioinform., 2015)

Bone enhancement in ultrasound using local spectrum variations for guiding percutaneous scaphoid fracture fixation procedures. - Emran Mohammad Abu Anas; Alexander Seitel; Abtin Rasoulian; Paul St. John; David R. Pichora; Kathryn Darras; David R. Wilson; Victoria A. Lessoway; Ilker Hacihaliloglu; Parvin Mousavi; Robert Rohling; Purang Abolmaesumi (Int. J. Comput. Assist. Radiol. Surg., 2015)

Augmenting MRI-transrectal ultrasound-guided prostate biopsy with temporal ultrasound data: a clinical feasibility study. - Farhad Imani; Bo Zhuang; Amir M. Tahmasebi; Jin Tae Kwak; Sheng Xu 001; Harsh K. Agarwal; Shyam Bharat; Nishant Uniyal; Ismail Baris Turkbey; Peter L. Choyke; Peter A. Pinto; Bradford J. Wood; et al. (Int. J. Comput. Assist. Radiol. Surg., 2015)

A multi-vertebrae CT to US registration of the lumbar spine in clinical data. - Simrin Nagpal; Purang Abolmaesumi; Abtin Rasoulian; Ilker Hacihaliloglu; Tamas Ungi; Jill Osborn; Victoria A. Lessoway; John F. Rudan; Melanie Jaeger; Robert N. Rohling; Dan P. Borschneck; Parvin Mousavi (Int. J. Comput. Assist. Radiol. Surg., 2015)

iCTNet2: integrating heterogeneous biological interactions to understand complex traits. - Lili Wang 005; Daniel S. Himmelstein; Adam Santaniello; Parvin Mousavi; Sergio E. Baranzini (F1000Research, 2015)

Ultrasound-Based Characterization of Prostate Cancer Using Joint Independent Component Analysis. - Farhad Imani; Mahdi Ramezani; Saman Nouranian; Eli Gibson; Amir Khojaste; Mena Gaed; Madeleine Moussa; Jose A. Gomez; Cesare Romagnoli; Michael Leveridge; Silvia D. Chang; Aaron Fenster; et al. (IEEE Trans. Biomed. Eng., 2015)

Computer-Aided Prostate Cancer Detection Using Ultrasound RF Time Series: In Vivo Feasibility Study. - Farhad Imani; Purang Abolmaesumi; Eli Gibson; Amir Khojaste; Mena Gaed; Madeleine Moussa; Jose A. Gomez; Cesare Romagnoli; Michael Leveridge; Silvia D. Chang; Robert Siemens; Aaron Fenster; et al. (IEEE Trans. Medical Imaging, 2015)

Biomechanically Constrained Surface Registration: Application to MR-TRUS Fusion for Prostate Interventions. - Siavash Khallaghi; C. Antonio Sánchez; Abtin Rasoulian; Yue Sun; Farhad Imani; Amir Khojaste; Orcun Goksel; Cesare Romagnoli; Hamidreza Abdi; Silvia D. Chang; Parvin Mousavi; Aaron Fenster; et al. (IEEE Trans. Medical Imaging, 2015)

Fusion of multi-parametric MRI and temporal ultrasound for characterization of prostate cancer: in vivo feasibility study. - Farhad Imani; Sahar Ghavidel; Purang Abolmaesumi; Siavash Khallaghi; Eli Gibson; Amir Khojaste; Mena Gaed; Madeleine Moussa; Jose A. Gomez; Cesare Romagnoli; Derek W. Cool; Matthew Bastian-Jordan; et al. (Computer-Aided Diagnosis, 2016)

Bone Enhancement in Ultrasound Based on 3D Local Spectrum Variation for Percutaneous Scaphoid Fracture Fixation. - Emran Mohammad Abu Anas; Alexander Seitel; Abtin Rasoulian; Paul St. John; Tamas Ungi; Andras Lasso; Kathryn Darras; David R. Wilson; Victoria A. Lessoway; Gabor Fichtinger; Michelle Zec; David R. Pichora; et al. (MICCAI (1), 2016)

Classifying Cancer Grades Using Temporal Ultrasound for Transrectal Prostate Biopsy. - Shekoofeh Azizi; Farhad Imani; Jin Tae Kwak; Amir M. Tahmasebi; Sheng Xu 001; Pingkun Yan; Jochen Kruecker; Baris Turkbey; Peter L. Choyke; Peter A. Pinto; Bradford J. Wood; Parvin Mousavi; et al. (MICCAI (1), 2016)

Prostate Cancer: Improved Tissue Characterization by Temporal Modeling of Radio-Frequency Ultrasound Echo Data. - Layan Nahlawi; Farhad Imani; Mena Gaed; Jose A. Gomez; Madeleine Moussa; Eli Gibson; Aaron Fenster; Aaron D. Ward; Purang Abolmaesumi; Hagit Shatkay; Parvin Mousavi (MICCAI (1), 2016)

Classification of prostate cancer grade using temporal ultrasound: in vivo feasibility study. - Sahar Ghavidel; Farhad Imani; Siavash Khallaghi; Eli Gibson; Amir Khojaste; Mena Gaed; Madeleine Moussa; Jose A. Gomez; D. Robert Siemens; Michael Leveridge; Silvia D. Chang; Aaron Fenster; et al. (Image-Guided Procedures, 2016)

Registration of a statistical model to intraoperative ultrasound for scaphoid screw fixation. - Emran Mohammad Abu Anas; Alexander Seitel; Abtin Rasoulian; Paul St. John; Tamas Ungi; Andras Lasso; Kathryn Darras; David R. Wilson; Victoria A. Lessoway; Gabor Fichtinger; Michelle Zec; David R. Pichora; et al. (Int. J. Comput. Assist. Radiol. Surg., 2016)

Detection of prostate cancer using temporal sequences of ultrasound data: a large clinical feasibility study. - Shekoofeh Azizi; Farhad Imani; Sahar Ghavidel; Amir M. Tahmasebi; Jin Tae Kwak; Sheng Xu 001; Baris Turkbey; Peter L. Choyke; Peter A. Pinto; Bradford J. Wood; Parvin Mousavi; Purang Abolmaesumi (Int. J. Comput. Assist. Radiol. Surg., 2016)

Automatic Segmentation of Wrist Bones in CT Using a Statistical Wrist Shape + Pose Model. - Emran Mohammad Abu Anas; Abtin Rasoulian; Alexander Seitel; Kathryn Darras; David R. Wilson; Paul St. John; David R. Pichora; Parvin Mousavi; Robert Rohling; Purang Abolmaesumi (IEEE Trans. Medical Imaging, 2016)

Classification of clinical significance of MRI prostate findings using 3D convolutional neural networks. - Alireza Mehrtash; Alireza Sedghi; Mohsen Ghafoorian; Mehdi Taghipour; Clare M. Tempany; William M. Wells III; Tina Kapur; Parvin Mousavi; Purang Abolmaesumi; Andriy Fedorov (Computer-Aided Diagnosis, 2017)

Clinical Target-Volume Delineation in Prostate Brachytherapy Using Residual Neural Networks. - Emran Mohammad Abu Anas; Saman Nouranian; Seyedeh Sara Mahdavi; Ingrid Spadinger; William J. Morris; Septimiu E. Salcudean; Parvin Mousavi; Purang Abolmaesumi (MICCAI (3), 2017)

Visualization of scoliotic spine using ultrasound-accessible skeletal landmarks. - Ben Church; Andras Lasso; Christopher Schlenger; Daniel P. Borschneck; Parvin Mousavi; Gabor Fichtinger; Tamas Ungi (Image-Guided Procedures, 2017)

Models of temporal enhanced ultrasound data for prostate cancer diagnosis: the impact of time-series order. - Layan Nahlawi; Caroline Goncalves; Farhad Imani; Mena Gaed; Jose A. Gomez; Madeleine Moussa; Eli Gibson; Aaron Fenster; Aaron D. Ward; Purang Abolmaesumi; Parvin Mousavi; Hagit Shatkay (Image-Guided Procedures, 2017)

Detection and grading of prostate cancer using temporal enhanced ultrasound: combining deep neural networks and tissue mimicking simulations. - Shekoofeh Azizi; Sharareh Bayat; Pingkun Yan; Amir M. Tahmasebi; Guy Nir; Jin Tae Kwak; Sheng Xu 001; Storey Wilson; Kenneth A. Iczkowski; M. Scott Lucia; Larry Goldenberg; Septimiu E. Salcudean; et al. (Int. J. Comput. Assist. Radiol. Surg., 2017)

Transfer learning from RF to B-mode temporal enhanced ultrasound features for prostate cancer detection. - Shekoofeh Azizi; Parvin Mousavi; Pingkun Yan; Amir M. Tahmasebi; Jin Tae Kwak; Sheng Xu 001; Baris Turkbey; Peter L. Choyke; Peter A. Pinto; Bradford J. Wood; Purang Abolmaesumi (Int. J. Comput. Assist. Radiol. Surg., 2017)

Model-based registration of preprocedure MR and intraprocedure US of the lumbar spine. - Delaram Behnami; Alireza Sedghi; Emran Mohammad Abu Anas; Abtin Rasoulian; Alexander Seitel; Victoria A. Lessoway; Tamas Ungi; David Yen; Jill Osborn; Parvin Mousavi; Robert Rohling; Purang Abolmaesumi (Int. J. Comput. Assist. Radiol. Surg., 2017)

Learning from Noisy Label Statistics: Detecting High Grade Prostate Cancer in Ultrasound Guided Biopsy. - Shekoofeh Azizi; Pingkun Yan; Amir M. Tahmasebi; Peter A. Pinto; Bradford J. Wood; Jin Tae Kwak; Sheng Xu 001; Baris Turkbey; Peter L. Choyke; Parvin Mousavi; Purang Abolmaesumi (MICCAI (4), 2018)

3D tissue mimicking biophantoms for ultrasound imaging: bioprinting and image analysis. - Shekoofeh Azizi; Sharareh Bayat; Ajay Rajaram; Emran Mohammad Abu Anas; Tamer Mohamed; Konrad Walus; Purang Abolmaesumi; Parvin Mousavi (Image-Guided Procedures, 2018)

Toward a real-time system for temporal enhanced ultrasound-guided prostate biopsy. - Shekoofeh Azizi; Nathan Van Woudenberg; Samira Sojoudi; Ming Li 052; Sheng Xu 001; Emran Mohammad Abu Anas; Pingkun Yan; Amir M. Tahmasebi; Jin Tae Kwak; Baris Turkbey; Peter L. Choyke; Peter A. Pinto; et al. (Int. J. Comput. Assist. Radiol. Surg., 2018)

Semi-Supervised Deep Metrics for Image Registration. - Alireza Sedghi; Jie Luo 003; Alireza Mehrtash; Steve Pieper 001; Clare M. Tempany; Tina Kapur; Parvin Mousavi; William M. Wells III (CoRR, 2018)

A deep learning approach for real time prostate segmentation in freehand ultrasound guided biopsy. - Emran Mohammad Abu Anas; Parvin Mousavi; Purang Abolmaesumi (Medical Image Anal., 2018)

Broadband Vibration Detection in Tissue Phantoms Using a Fiber Fabry-Perot Cavity. - Jack A. Barnes; Sijia Li; Apoorv Goyal; Purang Abolmaesumi; Parvin Mousavi; Hans-Peter Loock (IEEE Trans. Biomed. Eng., 2018)

Stochastic Modeling of Temporal Enhanced Ultrasound: Impact of Temporal Properties on Prostate Cancer Characterization. - Layan Nahlawi; Caroline Goncalves; Farhad Imani; Mena Gaed; Jose A. Gomez; Madeleine Moussa; Eli Gibson; Aaron Fenster; Aaron D. Ward; Purang Abolmaesumi; Hagit Shatkay; Parvin Mousavi (IEEE Trans. Biomed. Eng., 2018)

Deep Recurrent Neural Networks for Prostate Cancer Detection: Analysis of Temporal Enhanced Ultrasound. - Shekoofeh Azizi; Sharareh Bayat; Pingkun Yan; Amir Tahmasebi; Jin Tae Kwak; Sheng Xu 001; Baris Turkbey; Peter L. Choyke; Peter A. Pinto; Bradford J. Wood; Parvin Mousavi; Purang Abolmaesumi (IEEE Trans. Medical Imaging, 2018)

Fully End-To-End Super-Resolved Bone Age Estimation. - Mohammed Gasmallah; Farhana H. Zulkernine; François Rivest; Parvin Mousavi; Alireza Sedghi (Canadian AI, 2019)

Prediction of Patient-specific Acute Hypotensive Episodes in ICU Using Deep Models. - Brandon Chan; Alireza Sedghi; Philip Laird; David Maslove; Parvin Mousavi (EMBC, 2019)

Predictive Modeling using Intensive Care Unit Data: Considerations for Data Pre-processing and Analysis. - Brandon Chan; Alireza Sedghi; Philip Laird; David Maslove; Parvin Mousavi (EMBC, 2019)

Probabilistic Image Registration via Deep Multi-class Classification: Characterizing Uncertainty. - Alireza Sedghi; Tina Kapur; Jie Luo 003; Parvin Mousavi; William M. Wells III (UNSURE/CLIP@MICCAI, 2019)

Step-wise identification of ultrasound-visible anatomical landmarks for 3D visualization of scoliotic spine. - Zachary Baum; Ben Church; Andras Lasso; Tamas Ungi; Christopher Schlenger; Daniel P. Borschneck; Parvin Mousavi; Gabor Fichtinger (Image-Guided Procedures, 2019)

Tissue classification using machine learning to aid in intraoperative registration: a pilot study. - Brandon Chan; Jason Auyeung; John F. Rudan; Parvin Mousavi; Manuela Kunz (Image-Guided Procedures, 2019)

Mechanically controlled spectroscopic imaging for tissue classification. - Laura Connolly; Tamas Ungi; Andras Lasso; Thomas Vaughan; Mark Asselin; Parvin Mousavi; Scott Yam; Gabor Fichtinger (Image-Guided Procedures, 2019)

Temporal enhanced ultrasound and shear wave elastography for tissue classification in cancer interventions: an experimental evaluation. - Sijia Li; Jack A. Barnes; Purang Abolmaesumi; Hans-Peter Loock; Parvin Mousavi (Image-Guided Procedures, 2019)

Tesseract-medical imaging: open-source browser-based platform for artificial intelligence deployment in medical imaging. - Alireza Sedghi; Soheil Hamidi; Alireza Mehrtash; Erik Ziegler; Clare M. Tempany; Steve Pieper 001; Tina Kapur; Parvin Mousavi (Image-Guided Procedures, 2019)

Semi-supervised image registration using deep learning. - Alireza Sedghi; Jie Luo 003; Alireza Mehrtash; Steve Pieper 001; Clare M. Tempany; Tina Kapur; Parvin Mousavi; William M. Wells III (Image-Guided Procedures, 2019)

Exploring microRNA Regulation of Cancer with Context-Aware Deep Cancer Classifier. - Blake Pyman; Alireza Sedghi; Shekoofeh Azizi; Kathrin Tyryshkin; Neil Renwick; Parvin Mousavi (PSB, 2019)

Deep neural maps for unsupervised visualization of high-grade cancer in prostate biopsies. - Alireza Sedghi; Mehran Pesteie; Golara Javadi; Shekoofeh Azizi; Pingkun Yan; Jin Tae Kwak; Sheng Xu 001; Baris Turkbey; Peter L. Choyke; Peter A. Pinto; Bradford J. Wood; Robert Rohling; et al. (Int. J. Comput. Assist. Radiol. Surg., 2019)

Deep Information Theoretic Registration. - Alireza Sedghi; Jie Luo 003; Alireza Mehrtash; Steve Pieper 001; Clare M. Tempany; Tina Kapur; Parvin Mousavi; William M. Wells III (CoRR, 2019)

Soft Tissue Characterization with Temporal Enhanced Ultrasound through Periodic Manipulation of Point Spread Function: A Feasibility Study. - Justin Gerolami; Amoon Jamzad; Sijia Li; Sharareh Bayat; Purang Abolmaesumi; Parvin Mousavi (EMBC, 2020)

An End-to-End Solution for Automatic Contouring of Tumor Region in Intraoperative Images of Breast Lumpectomy. - Justin Gerolami; Victoria Wu; Paolo Nasute Fauerbach; Doris Jabs; Cecil Jay Engel; John F. Rudan; Shaila Merchant; Ross Walker; Emran Mohammad Abu Anas; Purang Abolmaesumi; Gabor Fichtinger; Tamas Ungi; et al. (EMBC, 2020)

Improved Resection Margins in Surgical Oncology Using Intraoperative Mass Spectrometry. - Amoon Jamzad; Alireza Sedghi; Alice M. L. Santilli; Natasja N. Y. Janssen; Martin Kaufmann; Kevin Yi Mi Ren; Kaitlin Vanderbeck; Ami Wang; Doug McKay; John F. Rudan; Gabor Fichtinger; Parvin Mousavi (MICCAI (3), 2020)

Complex Cancer Detector: Complex Neural Networks on Non-stationary Time Series for Guiding Systematic Prostate Biopsy. - Golara Javadi; Minh Nguyen Nhat To; Samareh Samadi; Sharareh Bayat; Samira Sojoudi; Antonio Hurtado; Silvia D. Chang; Peter C. Black; Parvin Mousavi; Purang Abolmaesumi (MICCAI (3), 2020)

Classification of tumor signatures from electrosurgical vapors using mass spectrometry and machine learning: a feasibility study. - Laura Connolly; Amoon Jamzad; Martin Kaufmann; Rachel Rubino; Alireza Sedghi; Tamas Ungi; Mark Asselin; Scott Yam; John F. Rudan; Christopher Nicol; Gabor Fichtinger; Parvin Mousavi (Image-Guided Procedures, 2020)

Towards democratizing AI in MR-based prostate cancer diagnosis: 3.0 to 1.5 Tesla. - Andrew Grebenisan; Alireza Sedghi; Alexandre Menard; Jason Izard; Robert Siemens; Parvin Mousavi (Image-Guided Procedures, 2020)

Image registration with deep probabilistic classifiers: application in radiation therapy. - Alireza Sedghi; Gregory Salomons; Jean-David Jutras; Jim Gooding; L. John Schreiner; William M. Wells III; Parvin Mousavi (Image-Guided Procedures, 2020)

Robotic tissue scanning with biophotonic probe. - Lauren Yates; Laura Connolly; Amoon Jamzad; Mark Asselin; Rachel Rubino; Scott Yam; Tamas Ungi; Andras Lasso; Christopher Nicol; Parvin Mousavi; Gabor Fichtinger (Image-Guided Procedures, 2020)

Intraoperative integration of structured light scanning for automatic tissue classification: a feasibility study. - Brandon Chan; John F. Rudan; Parvin Mousavi; Manuela Kunz (Int. J. Comput. Assist. Radiol. Surg., 2020)

Navigated tissue characterization during skin cancer surgery. - Natasja N. Y. Janssen; Martin Kaufmann; Alice M. L. Santilli; Amoon Jamzad; Kaitlin Vanderbeck; Kevin Yi Mi Ren; Tamas Ungi; Parvin Mousavi; John F. Rudan; Doug McKay; Ami Wang; Gabor Fichtinger (Int. J. Comput. Assist. Radiol. Surg., 2020)

Multiple instance learning combined with label invariant synthetic data for guiding systematic prostate biopsy: a feasibility study. - Golara Javadi; Samareh Samadi; Sharareh Bayat; Mehran Pesteie; Mohammad H. Jafari 001; Samira Sojoudi; Claudia Kesch; Antonio Hurtado; Silvia D. Chang; Parvin Mousavi; Peter C. Black; Purang Abolmaesumi (Int. J. Comput. Assist. Radiol. Surg., 2020)

Perioperative margin detection in basal cell carcinoma using a deep learning framework: a feasibility study. - Alice M. L. Santilli; Amoon Jamzad; Natasja N. Y. Janssen; Martin Kaufmann; Laura Connolly; Kaitlin Vanderbeck; Ami Wang; Doug McKay; John F. Rudan; Gabor Fichtinger; Parvin Mousavi (Int. J. Comput. Assist. Radiol. Surg., 2020)

Improving detection of prostate cancer foci via information fusion of MRI and temporal enhanced ultrasound. - Alireza Sedghi; Alireza Mehrtash; Amoon Jamzad; Amel Amalou; William M. Wells III; Tina Kapur; Jin Tae Kwak; Baris Turkbey; Peter L. Choyke; Peter A. Pinto; Bradford J. Wood; Sheng Xu 001; et al. (Int. J. Comput. Assist. Radiol. Surg., 2020)

Open Source Platform for Transperineal In-Bore MRI-Guided Targeted Prostate Biopsy. - Christian Herz; Kemal Tuncali; Andriy Fedorov; Kyle MacNeil; Peter A. Behringer; Junichi Tokuda; Alireza Mehrtash; Parvin Mousavi; Ron Kikinis; Fiona M. Fennessy; Clare M. Tempany (IEEE Trans. Biomed. Eng., 2020)

Utility of High-Throughput Imaging Mass Cytometry for Cancer Research: A feasibility study. - Sindhura Thirumal; Amoon Jamzad; Tiziana Cotechini; Charles T. Hindmarch; Céline Hardy; Nathalia Kim; Amber Simpson; Charles H. Graham; David M. Berman; D. Robert Siemens; Parvin Mousavi (BHI, 2021)

Prediction of patient survival following postanoxic coma using EEG data and clinical features. - Mahsa Aghaeeaval; Nathaniel Bendahan; Zaitoon Shivji; Carter McInnis; Amoon Jamzad; Lysa Boisse Lomax; Garima Shukla; Parvin Mousavi; Gavin P. Winston (EMBC, 2021)

Spatial Decomposition For Robust Domain Adaptation In Prostate Cancer Detection. - Andrew Grebenisan; Alireza Sedghi; Jason Izard; Robert Siemens; Alexandre Menard; Parvin Mousavi (ISBI, 2021)

Characterizing The Uncertainty Of Label Noise In Systematic Ultrasound-Guided Prostate Biopsy. - Golara Javadi; Samareh Samadi; Sharareh Bayat; Samira Sojoudi; Antonio Hurtado; Silvia D. Chang; Peter C. Black; Parvin Mousavi; Purang Abolmaesumi (ISBI, 2021)

Self-Supervised Learning For Detection Of Breast Cancer In Surgical Margins With Limited Data. - Alice M. L. Santilli; Amoon Jamzad; Alireza Sedghi; Martin Kaufmann; Shaila Merchant; Cecil Jay Engel; Kathryn Logan; Julie Wallis; Natasja N. Y. Janssen; Sonal Varma; Gabor Fichtinger; John F. Rudan; et al. (ISBI, 2021)

Graph Transformers for Characterization and Interpretation of Surgical Margins. - Amoon Jamzad; Alice M. L. Santilli; Faranak Akbarifar; Martin Kaufmann; Kathryn Logan; Julie Wallis; Kevin Yi Mi Ren; Shaila Merchant; Cecil Jay Engel; Sonal Varma; Gabor Fichtinger; John F. Rudan; et al. (MICCAI (7), 2021)

Training Deep Networks for Prostate Cancer Diagnosis Using Coarse Histopathological Labels. - Golara Javadi; Samareh Samadi; Sharareh Bayat; Samira Sojoudi; Antonio Hurtado; Silvia D. Chang; Peter C. Black; Parvin Mousavi; Purang Abolmaesumi (MICCAI (8), 2021)

Graph-based analysis of mass spectrometry data for tissue characterization with application in basal cell carcinoma surgery. - Faranak Akbarifar; Amoon Jamzad; Alice M. L. Santilli; M. Kauffman; Natasja N. Y. Janssen; Laura Connolly; Kevin Yi Mi Ren; Kaitlin Vanderbeck; Ami Wang; Doug McKay; John F. Rudan; Gabor Fichtinger; et al. (Image-Guided Procedures, 2021)

Machine learning to detect brain lesions in focal epilepsy. - Andrea Perera-Ortega; Alireza Sedghi; Jonah Isen; Sjoerd B. Vos; Parvin Mousavi; Gavin P. Winston (Image-Guided Procedures, 2021)

Ultrasound-guided needle placement system optimized for translation to Mauritania. - Julia Wiercigroch; Tamas Ungi; Ahmedou Moulaye Idriss; Yahya Tfeil; Ron Kikinis; Parvin Mousavi; Gabor Fichtinger (Image-Guided Procedures, 2021)

Development of an open-source system for prostate biopsy training in Senegal. - Catherine O. Wu; Babacar Diao; Tamas Ungi; Alireza Sedghi; Ron Kikinis; Parvin Mousavi; Gabor Fichtinger (Image-Guided Procedures, 2021)

Detecting Atrial Fibrillation in ICU Telemetry data with Weak Labels. - Brian Chen; Golara Javadi; Amoon Jamzad; Alexander Hamilton; Stephanie Sibley; Purang Abolmaesumi; David Maslove; Parvin Mousavi (MLHC, 2021)

Domain adaptation and self-supervised learning for surgical margin detection. - Alice M. L. Santilli; Amoon Jamzad; Alireza Sedghi; Martin Kaufmann; Kathryn Logan; Julie Wallis; Kevin Yi Mi Ren; Natasja N. Y. Janssen; Shaila Merchant; Cecil Jay Engel; Doug McKay; Sonal Varma; et al. (Int. J. Comput. Assist. Radiol. Surg., 2021)

Combined Mass Spectrometry and Histopathology Imaging for Perioperative Tissue Assessment in Cancer Surgery. - Laura Connolly; Amoon Jamzad; Martin Kaufmann; Catriona E. Farquharson; Kevin Yi Mi Ren; John F. Rudan; Gabor Fichtinger; Parvin Mousavi (J. Imaging, 2021)

Design of an Ultrasound-Navigated Prostate Cancer Biopsy System for Nationwide Implementation in Senegal. - Gabor Fichtinger; Parvin Mousavi; Tamas Ungi; Aaron Fenster; Purang Abolmaesumi; Gernot Kronreif; Juan Ruiz-Alzola; Alain Ndoye; Babacar Diao; Ron Kikinis (J. Imaging, 2021)

Image registration: Maximum likelihood, minimum entropy and deep learning. - Alireza Sedghi; Lauren J. O'Donnell; Tina Kapur; Erik G. Learned-Miller; Parvin Mousavi; William M. Wells III (Medical Image Anal., 2021)

Automated Cell Phenotyping for Imaging Mass Cytometry. - Sindhura Thirumal; Amoon Jamzad; Tiziana Cotechini; D. Robert Siemens; Parvin Mousavi (EMBC, 2022)

Uncertainty-Aware Deep Ensemble Model For Targeted Ultrasound-Guided Prostate Biopsy. - Fahimeh Fooladgar; Minh Nguyen Nhat To; Golara Javadi; Samareh Samadi; Sharareh Bayat; Samira Sojoudi; Walid Eshumani; Antonio Hurtado; Silvia D. Chang; Peter C. Black; Parvin Mousavi; Purang Abolmaesumi (ISBI, 2022)

Towards Confident Detection of Prostate Cancer Using High Resolution Micro-ultrasound. - Mahdi Gilany; Paul F. R. Wilson; Amoon Jamzad; Fahimeh Fooladgar; Minh Nguyen Nhat To; Brian Wodlinger; Purang Abolmaesumi; Parvin Mousavi (MICCAI (4), 2022)

Feasibility of combined optical and acoustic imaging for surgical cavity scanning. - Laura Connolly; Amoon Jamzad; Arash Nikniazi; Rana Poushimin; Jean-Michel Nunzi; John F. Rudan; Gabor Fichtinger; Parvin Mousavi (Image-Guided Procedures, 2022)

Phase recognition and cautery localization in basal cell carcinoma surgical videos. - Lucas March; Jessica Robin Rodgers; Amoon Jamzad; Alice M. L. Santilli; Rebecca Hisey; Doug McKay; John F. Rudan; Martin Kaufmann; Kevin Yi Mi Ren; Gabor Fichtinger; Parvin Mousavi (Image-Guided Procedures, 2022)

Deep image clustering for standardization of radiological workflows. - Dhruv Patel; Erik Ziegler; Rob Lewis; Parvin Mousavi; Alireza Sedghi (Image-Guided Procedures, 2022)

Topology preserving stratification of tissue neoplasticity using Deep Neural Maps and microRNA signatures. - Emily Kaczmarek; Jina Nanayakkara; Alireza Sedghi; Mehran Pesteie; Thomas Tuschl; Neil Renwick; Parvin Mousavi (BMC Bioinform., 2022)

Uncertainty estimation for margin detection in cancer surgery using mass spectrometry. - Fahimeh Fooladgar; Amoon Jamzad; Laura Connolly; Alice M. L. Santilli; Martin Kaufmann; Kevin Yi Mi Ren; Purang Abolmaesumi; John F. Rudan; Doug McKay; Gabor Fichtinger; Parvin Mousavi (Int. J. Comput. Assist. Radiol. Surg., 2022)

Real-time automatic tumor segmentation for ultrasound-guided breast-conserving surgery navigation. - Zoe Hu; Paola V. Nasute Fauerbach; Chris Yeung; Tamas Ungi; John F. Rudan; Cecil Jay Engel; Parvin Mousavi; Gabor Fichtinger; Doris Jabs (Int. J. Comput. Assist. Radiol. Surg., 2022)

Towards targeted ultrasound-guided prostate biopsy by incorporating model and label uncertainty in cancer detection. - Golara Javadi; Sharareh Bayat; Mohammad Mahdi Kazemi Esfeh; Samareh Samadi; Alireza Sedghi; Samira Sojoudi; Antonio Hurtado; Silvia D. Chang; Peter C. Black; Parvin Mousavi; Purang Abolmaesumi (Int. J. Comput. Assist. Radiol. Surg., 2022)

Training deep neural networks with noisy clinical labels: toward accurate detection of prostate cancer in US data. - Golara Javadi; Samareh Samadi; Sharareh Bayat; Samira Sojoudi; Antonio Hurtado; Walid Eshumani; Silvia D. Chang; Peter C. Black; Parvin Mousavi; Purang Abolmaesumi (Int. J. Comput. Assist. Radiol. Surg., 2022)

Coarse label refinement for improving prostate cancer detection in ultrasound imaging. - Minh Nguyen Nhat To; Fahimeh Fooladgar; Golara Javadi; Sharareh Bayat; Samira Sojoudi; Antonio Hurtado; Silvia D. Chang; Peter C. Black; Parvin Mousavi; Purang Abolmaesumi (Int. J. Comput. Assist. Radiol. Surg., 2022)

Computer-aided identification of stroke-associated motor impairments using a virtual reality augmented robotic system. - Faranak Akbarifar; Sean P. Dukelow; Parvin Mousavi; Stephen H. Scott (Comput. methods Biomech. Biomed. Eng. Imaging Vis., 2022)

Self-Supervised Learning with Limited Labeled Data for Prostate Cancer Detection in High Frequency Ultrasound. - Paul F. R. Wilson; Mahdi Gilany; Amoon Jamzad; Fahimeh Fooladgar; Minh Nguyen Nhat To; Brian Wodlinger; Purang Abolmaesumi; Parvin Mousavi (CoRR, 2022)

Toward ECG-based analysis of hypertrophic cardiomyopathy: a novel ECG segmentation method for handling abnormalities. - Kasra Nezamabadi; Jacob Mayfield; Pengyuan Li 001; Gabriela V. Greenland; Sebastian Rodriguez; Bahadir Simsek; Parvin Mousavi; Hagit Shatkay; M. Roselle Abraham (J. Am. Medical Informatics Assoc., 2022)

Bridging 3D Slicer and ROS2 for Image-Guided Robotic Interventions. - Laura Connolly; Anton Deguet; Simon Léonard; Junichi Tokuda; Tamas Ungi; Axel Krieger; Peter Kazanzides; Parvin Mousavi; Gabor Fichtinger; Russell H. Taylor (Sensors, 2022)

Sensor-Based Automated Detection of Electrosurgical Cautery States. - Joshua Ehrlich; Amoon Jamzad; Mark Asselin; Jessica Robin Rodgers; Martin Kaufmann; Tamás Haidegger; John F. Rudan; Parvin Mousavi; Gabor Fichtinger; Tamas Ungi (Sensors, 2022)

Application of Intraoperative Mass Spectrometry and Data Analytics for Oncological Margin Detection, A Review. - Alice Maria Leondina Santilli; Kevin Yi Mi Ren; Richard Oleschuk; Martin Kaufmann; John F. Rudan; Gabor Fichtinger; Parvin Mousavi (IEEE Trans. Biomed. Eng., 2022)

Bridging Ex-Vivo Training and Intra-operative Deployment for Surgical Margin Assessment with Evidential Graph Transformer. - Amoon Jamzad; Fahimeh Fooladgar; Laura Connolly; Dilakshan Srikanthan; Ayesha Syeda; Martin Kaufmann; Kevin Yi Mi Ren; Shaila Merchant; Cecil Jay Engel; Sonal Varma; Gabor Fichtinger; John F. Rudan; et al. (MICCAI (7), 2023)

Determining the time-delay of a mass spectrometry-based tissue sensor. - Josh Ehrlich; Chris Yeung; Martin Kaufman; Amoon Jamzad; John F. Rudan; Parvin Mousavi; Gabor Fichtinger; Tamas Ungi (Image-Guided Procedures, 2023)

ViPRE: an open-source software implementation for end-to-end analysis of mass spectrometry data. - Hanad Elmi; Amoon Jamzad; Mackenzie Sharp; Jessica R. Rodgers; Martin Kaufmann; Tamara Jamaspishvili; Rachael Iseman; David Berman; John F. Rudan; Gabor Fichtinger; Parvin Mousavi (Image-Guided Procedures, 2023)

Multi-catheter modelling in reconstructed 3D transrectal ultrasound images from prostate brachytherapy. - Nicole Kitner; Jessica R. Rodgers; Tamas Ungi; Martin Korzeniowski; Timothy Olding; Parvin Mousavi; Gabor Fichtinger (Image-Guided Procedures, 2023)

Cautery tool state detection using deep learning on intraoperative surgery videos. - Lucas March; Jessica R. Rodgers; Rebecca Hisey; Amoon Jamzad; Alice M. L. Santilli; Doug McKay; John F. Rudan; Martin Kaufmann; Kevin Yi Mi Ren; Gabor Fichtinger; Parvin Mousavi (Image-Guided Procedures, 2023)

Tracked tissue sensing for tumor bed inspection. - David Morton; Laura Connolly; Leah A. Groves; Kyle Sunderland; Amoon Jamzad; John F. Rudan; Gabor Fichtinger; Tamas Ungi; Parvin Mousavi (Image-Guided Procedures, 2023)

Navigated surgical resection cavity inspection for breast conserving surgery. - Olivia Radcliffe; Laura Connolly; Tamas Ungi; Caitlin T. Yeo; John F. Rudan; Gabor Fichtinger; Parvin Mousavi (Image-Guided Procedures, 2023)

Attention-based multi-instance learning for improved glioblastoma detection using mass spectrometry. - Dilakshan Srikanthan; Martin Kaufmann; Amoon Jamzad; Ayesha Syeda; Alice M. L. Santilli; Alireza Sedghi; Gabor Fichtinger; Jamie Purzner; John F. Rudan; Teresa Purzner; Parvin Mousavi (Image-Guided Procedures, 2023)

Self-supervised learning and uncertainty estimation for surgical margin detection. - Ayesha Syeda; Fahimeh Fooladgar; Amoon Jamzad; Dilakshan Srikanthan; Martin Kaufmann; Kevin Yi Mi Ren; Cecil Jay Engel; Ross Walker; Shaila Merchant; Doug McKay; Sonal Varma; Gabor Fichtinger; et al. (Image-Guided Procedures, 2023)

Cautery trajectory analysis for evaluation of resection margins in breast-conserving surgery. - Chris Yeung; Joshua Ehrlich; Amoon Jamzad; Martin Kaufmann; John F. Rudan; Cecil Jay Engel; Parvin Mousavi; Tamas Ungi; Gabor Fichtinger (Image-Guided Procedures, 2023)

Domain Transfer Through Image-to-Image Translation for Uncertainty-Aware Prostate Cancer Classification. - Meng Zhou; Amoon Jamzad; Jason Izard; Alexandre Menard; Robert Siemens; Parvin Mousavi (CoRR, 2023)

TRUSformer: improving prostate cancer detection from micro-ultrasound using attention and self-supervision. - Mahdi Gilany; Paul F. R. Wilson; Andrea Perera-Ortega; Amoon Jamzad; Minh Nguyen Nhat To; Fahimeh Fooladgar; Brian Wodlinger; Purang Abolmaesumi; Parvin Mousavi (Int. J. Comput. Assist. Radiol. Surg., 2023)

Semi-supervised learning from coarse histopathology labels. - Fahimeh Fooladgar; Minh Nguyen Nhat To; Golara Javadi; Samira Sojoudi; Walid Eshumani; Silvia D. Chang; Peter C. Black; Parvin Mousavi; Purang Abolmaesumi (Comput. methods Biomech. Biomed. Eng. Imaging Vis., 2023)

A Review of Low-Cost Ultrasound Compatible Phantoms. - Leah A. Groves; Mohamed Keita; Saidou Talla; Ron Kikinis; Gabor Fichtinger; Parvin Mousavi; Mamadou Camara (IEEE Trans. Biomed. Eng., 2023)

Digital Nudges in Healthcare Contexts: An Information Systems Perspective. - Sophia Mannina; Shamel Addas; Purang Abolmaesumi; Parvin Mousavi; Nooshin Maghsoodi; Sarah Nassar; David Maslove; Stephanie Sibley (AMCIS, 2024)

Extracting 3D Prostate Geometry from 2D Optically-Tracked Transrectal Ultrasound Images. - Colton Barr; Leah A. Groves; Tamas Ungi; D. Robert Siemens; Babacar Diao; Ron Kikinis; Parvin Mousavi; Gabor Fichtinger (CCECE, 2024)

Assessing the Performance of Foundation Models in Prostate Segmentation Across Different Ultrasound Modalities. - Vivian Nguyen; Amoon Jamzad; Paul F. R. Wilson; Mahdi Gilany; Purang Abolmaesumi; Michael Leveridge; Robert Siemens; Parvin Mousavi (CCECE, 2024)

Towards Improving Surgical Margins in Tumour Resection Using Mass Spectrometry Imaging. - Jade Warren; Amoon Jamzad; Tamara Jamaspishvili; Rachael Iseman; Ayesha Syeda; Martin Kaufmann; John F. Rudan; Gabor Fichtinger; David M. Berman; Parvin Mousavi (CCECE, 2024)

Manifold DivideMix: A Semi-Supervised Contrastive Learning Framework for Severe Label Noise. - Fahimeh Fooladgar; Minh Nguyen Nhat To; Parvin Mousavi; Purang Abolmaesumi (CVPR Workshops, 2024)

ProstNFound: Integrating Foundation Models with Ultrasound Domain Knowledge and Clinical Context for Robust Prostate Cancer Detection. - Paul F. R. Wilson; Minh Nguyen Nhat To; Amoon Jamzad; Mahdi Gilany; Mohamed Harmanani; Tarek Elghareb; Fahimeh Fooladgar; Brian Wodlinger; Purang Abolmaesumi; Parvin Mousavi (MICCAI (6), 2024)

Calibrated Diverse Ensemble Entropy Minimization for Robust Test-Time Adaptation in Prostate Cancer Detection. - Mahdi Gilany; Mohamed Harmanani; Paul F. R. Wilson; Minh Nguyen Nhat To; Amoon Jamzad; Fahimeh Fooladgar; Brian Wodlinger; Purang Abolmaesumi; Parvin Mousavi (MLMI@MICCAI (1), 2024)

Benchmarking Image Transformers for Prostate Cancer Detection from Ultrasound Data. - Mohamed Harmanani; Paul F. R. Wilson; Fahimeh Fooladgar; Amoon Jamzad; Mahdi Gilany; Minh Nguyen Nhat To; Brian Wodlinger; Purang Abolmaesumi; Parvin Mousavi (CoRR, 2024)

Toward confident prostate cancer detection using ultrasound: a multi-center study. - Paul F. R. Wilson; Mohamed Harmanani; Minh Nguyen Nhat To; Mahdi Gilany; Amoon Jamzad; Fahimeh Fooladgar; Brian Wodlinger; Purang Abolmaesumi; Parvin Mousavi (Int. J. Comput. Assist. Radiol. Surg., 2024)

ImSpect: Image-driven self-supervised learning for surgical margin evaluation with mass spectrometry. - Laura Connolly; Fahimeh Fooladgar; Amoon Jamzad; Martin Kaufmann; Ayesha Syeda; Kevin Yi Mi Ren; Purang Abolmaesumi; John F. Rudan; Doug McKay; Gabor Fichtinger; Parvin Mousavi (Int. J. Comput. Assist. Radiol. Surg., 2024)

LensePro: label noise-tolerant prototype-based network for improving cancer detection in prostate ultrasound with limited annotations. - Minh Nguyen Nhat To; Fahimeh Fooladgar; Paul F. R. Wilson; Mohamed Harmanani; Mahdi Gilany; Samira Sojoudi; Amoon Jamzad; Silvia D. Chang; Peter C. Black; Parvin Mousavi; Purang Abolmaesumi (Int. J. Comput. Assist. Radiol. Surg., 2024)

From quantitative metrics to clinical success: assessing the utility of deep learning for tumor segmentation in breast surgery. - Chris Yeung; Tamas Ungi; Zoe Hu; Amoon Jamzad; Martin Kaufmann; Ross Walker; Shaila Merchant; Cecil Jay Engel; Doris Jabs; John F. Rudan; Parvin Mousavi; Gabor Fichtinger (Int. J. Comput. Assist. Radiol. Surg., 2024)

Self-supervised Prototype Learning for Spatio-Temporal Enhanced Ultrasound-based Prostate Cancer Detection. - Tarek Elghareb; Amoon Jamzad; Minh Nguyen Nhat To; Fahimeh Fooladgar; Paul F. R. Wilson; Samira Sojoudi; Gabrielle Reznik; Michael Leveridge; Robert Siemens; Silvia D. Chang; Peter C. Black; Parvin Mousavi; et al. (ISBI, 2025)

CINEPRO: Robust Training of Foundation Models for Cancer Detection in Prostate Ultrasound Cineloops. - Mohamed Harmanani; Amoon Jamzad; Minh Nguyen Nhat To; Paul F. R. Wilson; Zhuoxin Guo; Fahimeh Fooladgar; Samira Sojoudi; Mahdi Gilany; Silvia D. Chang; Peter C. Black; Michael Leveridge; Robert Siemens; et al. (ISBI, 2025)

TRUSWorthy: toward clinically applicable deep learning for confident detection of prostate cancer in micro-ultrasound. - Mohamed Harmanani; Paul F. R. Wilson; Minh Nguyen Nhat To; Mahdi Gilany; Amoon Jamzad; Fahimeh Fooladgar; Brian Wodlinger; Purang Abolmaesumi; Parvin Mousavi (Int. J. Comput. Assist. Radiol. Surg., 2025)

Diverse Prototypical Ensembles Improve Robustness to Subpopulation Shift. - Minh Nguyen Nhat To; Paul F. R. Wilson; Viet Nguyen; Mohamed Harmanani; Michael Cooper; Fahimeh Fooladgar; Purang Abolmaesumi; Parvin Mousavi; Rahul G. Krishnan (CoRR, 2025)

Touching the tumor boundary: a pilot study on ultrasound-based virtual fixtures for breast-conserving surgery. - Laura Connolly; Tamas Ungi; Adnan Munawar; Anton Deguet; Chris Yeung; Russell H. Taylor; Parvin Mousavi; Gabor Fichtinger; Keyvan Hashtrudi-Zaad (Int. J. Comput. Assist. Radiol. Surg., 2025)

FACT: foundation model for assessing cancer tissue margins with mass spectrometry. - Mohammad Farahmand; Amoon Jamzad; Fahimeh Fooladgar; Laura Connolly; Martin Kaufmann; Kevin Yi Mi Ren; John F. Rudan; Doug McKay; Gabor Fichtinger; Parvin Mousavi (Int. J. Comput. Assist. Radiol. Surg., 2025)