MEAT: an experiment memory for interpreting DNA microarray analyses. - Khaled Khelif; Rose Dieng-Kuntz; Pascal Barbry (K-CAP, 2005)

Semantic Web Technologies for Interpreting DNA Microarray Analyses: The MEAT System. - Khaled Khelif; Rose Dieng-Kuntz; Pascal Barbry (WISE, 2005)

Web sémantique pour la mémoire d'expériences d'une communauté scientifique : le projet MEAT. - Khaled Khelif; Rose Dieng-Kuntz; Pascal Barbry (EGC, 2006)

Mediante: a web-based microarray data manager. - Kevin Le Brigand; Pascal Barbry (Bioinform., 2007)

An Ontology-based Approach to Support Text Mining and Information Retrieval in the Biological Domain. - Khaled Khelif; Rose Dieng-Kuntz; Pascal Barbry (J. Univers. Comput. Sci., 2007)

MiRonTop: mining microRNAs targets across large scale gene expression studies. - Kevin Le Brigand; Karine Robbe-Sermesant; Bernard Mari; Pascal Barbry (Bioinform., 2010)

RiboProfiling: a Bioconductor package for standard Ribo-seq pipeline processing. - Alexandra Popa; Kevin Le Brigand; Agnes Paquet; Nicolas Nottet; Karine Robbe-Sermesant; Rainer Waldmann; Pascal Barbry (F1000Research, 2016)

OligoArchive: Using DNA in the DBMS storage hierarchy. - Raja Appuswamy; Kevin Le Brigand; Pascal Barbry; Marc Antonini; Olivier Madderson; Paul S. Freemont; James McDonald; Thomas Heinis (CIDR, 2019)

A biologically constrained encoding solution for long-term storage of images onto synthetic DNA. - Melpomeni Dimopoulou; Marc Antonini; Pascal Barbry; Raja Appuswamy (EUSIPCO, 2019)

Storing Digital Data Into DNA: A Comparative Study Of Quaternary Code Construction. - Melpomeni Dimopoulou; Marc Antonini; Pascal Barbry; Raja Appuswamy (ICASSP, 2020)

Decoding Of Nanopore-Sequenced Synthetic DNA Storing Digital Images. - Eva Gil San Antonio; Melpomeni Dimopoulou; Marc Antonini; Pascal Barbry; Raja Appuswamy (ICIP, 2021)

Image storage onto synthetic DNA. - Melpomeni Dimopoulou; Marc Antonini; Pascal Barbry; Raja Appuswamy (Signal Process. Image Commun., 2021)

Efficient Clustering Using Alternating Minimization And A Projection-Gradient Method For Dimension Reduction. - Cyprien Gilet; Marie Deprez; Pascal Barbry; Jean-Baptiste Caillau; Michel Barlaud (ICIP, 2022)

Using Soft Information to Improve Error Tolerance of Motif-Based DNA Storage Systems. - Eugenio Marinelli; Virginie Magnone; Marie-Charlotte Dumargne; Pascal Barbry; Raja Appuswamy (DSP, 2023)

Towards Migration-Free Just-In-Case Data Archival for Future Cloud Data Lakes. - Eugenio Marinelli; Yiqing Yan; Virginie Magnone; Charlotte Dumargne; Pascal Barbry; Thomas Heinis; Raja Appuswamy (Proc. VLDB Endow., 2023)

CMOSS: A Reliable, Motif-based Columnar Molecular Storage System. - Eugenio Marinelli; Yiqing Yan; Virginie Magnone; Pascal Barbry; Raja Appuswamy (CoRR, 2024)

Detecting subtle transcriptomic perturbations induced by lncRNAs knock-down in single-cell CRISPRi screening using a new sparse supervised autoencoder neural network. - Marin Truchi; Caroline Lacoux; Cyprien Gille; Julien Fassy; Virginie Magnone; Rafael Lopes Goncalves; Cédric Girard Riboulleau; Iris Manosalva-Pena; Marine Gautier-Isola; Kevin Lebrigand; Pascal Barbry; Salvatore Spicuglia; et al. (Frontiers Bioinform., 2024)