dictyBase: a new Dictyostelium discoideum genome database. - Lisa Kreppel; Petra Fey; Pascale Gaudet; Eric M. Just; Warren A. Kibbe; Rex L. Chisholm; Alan R. Kimmel (Nucleic Acids Res., 2004)

dictyBase, the model organism database for Dictyostelium discoideum. - Rex L. Chisholm; Pascale Gaudet; Eric M. Just; Karen E. Pilcher; Petra Fey; Sohel N. Merchant; Warren A. Kibbe (Nucleic Acids Res., 2006)

Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase. - Pascale Gaudet; Lydie Lane; Petra Fey; Alan J. Bridge; Sylvain Poux; Andrea H. Auchincloss; Kristian B. Axelsen; Silvia Braconi-Quintaje; Emmanuel Boutet; P. Brown; Elisabeth Coudert; Ruchira S. Datta; et al. (Database J. Biol. Databases Curation, 2009)

dictyBase - a Dictyostelium bioinformatics resource update. - Petra Fey; Pascale Gaudet; Tomaz Curk; Blaz Zupan; Eric M. Just; Siddhartha Basu; Sohel N. Merchant; Yulia A. Bushmanova; Gad Shaulsky; Warren A. Kibbe; Rex L. Chisholm (Nucleic Acids Res., 2009)

PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium. - Huaiyu Mi; Qing Dong; Anushya Muruganujan; Pascale Gaudet; Suzanna Lewis; Paul D. Thomas (Nucleic Acids Res., 2010)

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. - Pascale Gaudet; Michael S. Livstone; Suzanna E. Lewis; Paul D. Thomas (Briefings Bioinform., 2011)

Towards BioDBcore: a community-defined information specification for biological databases. - Pascale Gaudet; Amos Bairoch; Dawn Field; Susanna-Assunta Sansone; Chris F. Taylor; Teresa K. Attwood; Alex Bateman; Judith A. Blake; Carol J. Bult; J. Michael Cherry; Rex L. Chisholm; Guy Cochrane; et al. (Database J. Biol. Databases Curation, 2011)

BioCreative III interactive task: an overview. - Cecilia N. Arighi; Phoebe M. Roberts; Shashank Agarwal; Sanmitra Bhattacharya; Gianni Cesareni; Andrew Chatr-aryamontri; Simon Clematide; Pascale Gaudet; Michelle G. Giglio; Ian Harrow; Eva Huala; Martin Krallinger; et al. (BMC Bioinform., 2011)

dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa. - Pascale Gaudet; Petra Fey; Siddhartha Basu; Yulia A. Bushmanova; Robert J. Dodson; Kerry A. Sheppard; Eric M. Just; Warren A. Kibbe; Rex L. Chisholm (Nucleic Acids Res., 2011)

Biocurators and Biocuration: surveying the 21st century challenges. - Sarah W. Burge; Teresa K. Attwood; Alex Bateman; Tanya Z. Berardini; J. Michael Cherry; Claire O'Donovan; Ioannis Xenarios; Pascale Gaudet (Database J. Biol. Databases Curation, 2012)

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference. - Pascale Gaudet; Cecilia N. Arighi; Frederic B. Bastian; Alex Bateman; Judith A. Blake; J. Michael Cherry; Peter D'Eustachio; Robert D. Finn; Michelle G. Giglio; Lynette Hirschman; Renate Kania; William Klimke; et al. (Database J. Biol. Databases Curation, 2012)

Biocuration Virtual Issue 2012. - Pascale Gaudet; Raja Mazumder (Database J. Biol. Databases Curation, 2012)

neXtProt: a knowledge platform for human proteins. - Lydie Lane; Ghislaine Argoud-Puy; Aurore Britan; Isabelle Cusin; Paula Duek Roggli; Olivier Evalet; Alain Gateau; Pascale Gaudet; Anne Gleizes; Alexandre Masselot; Catherine Zwahlen; Amos Bairoch (Nucleic Acids Res., 2012)

DATABASE, The Journal of Biological Databases and Curation, is now the official journal of the International Society for Biocuration. - Pascale Gaudet; Monica C. Munoz-Torres; Marc Robinson-Rechavi; Teresa K. Attwood; Alex Bateman; J. Michael Cherry; Renate Kania; Claire O'Donovan; Chisato Yamasaki (Database J. Biol. Databases Curation, 2013)

Querying neXtProt nanopublications and their value for insights on sequence variants and tissue expression. - Christine Chichester; Pascale Gaudet; Oliver Karch; Paul Groth; Lydie Lane; Amos Bairoch; Barend Mons; Antonis Loizou (J. Web Semant., 2014)

The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations. - Frederic B. Bastian; Marcus C. Chibucos; Pascale Gaudet; Michelle G. Giglio; Gemma L. Holliday; Hong Huang; Suzanna E. Lewis; Anne Niknejad; Sandra E. Orchard; Sylvain Poux; Nives Skunca; Marc Robinson-Rechavi (Database J. Biol. Databases Curation, 2015)

Deep Question Answering for protein annotation. - Julien Gobeill; Arnaud Gaudinat; Emilie Pasche; Dina Vishnyakova; Pascale Gaudet; Amos Bairoch; Patrick Ruch (Database J. Biol. Databases Curation, 2015)

The neXtProt knowledgebase on human proteins: current status. - Pascale Gaudet; Pierre-André Michel; Monique Zahn-Zabal; Isabelle Cusin; Paula Duek Roggli; Olivier Evalet; Alain Gateau; Anne Gleizes; Mario Pereira; Daniel Dinis Teixeira; Ying Zhang; Lydie Lane; et al. (Nucleic Acids Res., 2015)

GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training. - Teresa K. Attwood; Erik Bongcam-Rudloff; Michelle D. Brazas; Manuel Corpas; Pascale Gaudet; Fran Lewitter; Nicola J. Mulder; Patricia M. Palagi; Maria Victoria Schneider; Celia W. G. van Gelder (PLoS Comput. Biol., 2015)

Converting neXtProt into Linked Data and nanopublications. - Christine Chichester; Oliver Karch; Pascale Gaudet; Lydie Lane; Barend Mons; Amos Bairoch (Semantic Web, 2015)

Large-scale inference of gene function through phylogenetic annotation of Gene Ontology terms: case study of the apoptosis and autophagy cellular processes. - Marc Feuermann; Pascale Gaudet; Huaiyu Mi; Suzanna E. Lewis; Paul D. Thomas (Database J. Biol. Databases Curation, 2016)

ICEPO: the ion channel electrophysiology ontology. - Valérie Hinard; Aurore Britan; J. S. Rougier; Amos Bairoch; Hugues Abriel; Pascale Gaudet (Database J. Biol. Databases Curation, 2016)

neXtA5: accelerating annotation of articles via automated approaches in neXtProt. - Luc Mottin; Julien Gobeill; Emilie Pasche; Pierre-André Michel; Isabelle Cusin; Pascale Gaudet; Patrick Ruch (Database J. Biol. Databases Curation, 2016)

Triage by ranking to support the curation of protein interactions. - Luc Mottin; Emilie Pasche; Julien Gobeill; Valentine Rech de Laval; Anne Gleizes; Pierre-André Michel; Amos Bairoch; Pascale Gaudet; Patrick Ruch (Database J. Biol. Databases Curation, 2017)

The neXtProt knowledgebase on human proteins: 2017 update. - Pascale Gaudet; Pierre-André Michel; Monique Zahn-Zabal; Aurore Britan; Isabelle Cusin; Marcin Domagalski; Paula Duek Roggli; Alain Gateau; Anne Gleizes; Valérie Hinard; Valentine Rech de Laval; JinJin Lin; et al. (Nucleic Acids Res., 2017)

Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt. - Aurore Britan; Isabelle Cusin; Valérie Hinard; Luc Mottin; Emilie Pasche; Julien Gobeill; Valentine Rech de Laval; Anne Gleizes; Daniel Dinis Teixeira; Pierre-André Michel; Patrick Ruch; Pascale Gaudet (Database J. Biol. Databases Curation, 2018)

Overview of the BioCreative VI text-mining services for Kinome Curation Track. - Julien Gobeill; Pascale Gaudet; Daniel Dopp; Adam Morrone; Indika Kahanda; Yi-Yu Hsu; Chih-Hsuan Wei; Zhiyong Lu; Patrick Ruch (Database J. Biol. Databases Curation, 2018)

An Example of Multimodal Biological Knowledge Representation. - José Antonio Vera-Ramos; Belén Juanes-Cortés; Jesualdo Tomás Fernández-Breis; Pascale Gaudet; Martin Kuiper; Astrid Lægreid; Colin Logie; María del Mar Roldán García; Stefan Schulz 001 (JOWO, 2019)

Annotation of gene product function from high-throughput studies using the Gene Ontology. - Helen Attrill; Pascale Gaudet; Rachael P. Huntley; Ruth C. Lovering; Stacia R. Engel; Sylvain Poux; Kimberly M. Van Auken; George E. Georghiou; Marcus C. Chibucos; Tanya Z. Berardini; Valerie Wood; Harold J. Drabkin; et al. (Database J. Biol. Databases Curation, 2019)

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. - Toshiaki Katayama; Shuichi Kawashima; Gos Micklem; Shin Kawano; Jin-Dong Kim; Simon Kocbek; Shinobu Okamoto; Yue Wang 040; Hongyan Wu; Atsuko Yamaguchi; Yasunori Yamamoto; Erick Antezana; et al. (F1000Research, 2019)

ECO, the Evidence & Conclusion Ontology: community standard for evidence information. - Michelle G. Giglio; Rebecca Tauber; Suvarna Nadendla; James B. Munro; Dustin Olley; Shoshannah Ball; Elvira Mitraka; Lynn M. Schriml; Pascale Gaudet; Elizabeth T. Hobbs; Ivan Erill; Deborah A. Siegele; et al. (Nucleic Acids Res., 2019)

The Gene Ontology. - Pascale Gaudet (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)

The Feature-Viewer: a visualization tool for positional annotations on a sequence. - Lisanna Paladin; Mathieu Schaeffer; Pascale Gaudet; Monique Zahn-Zabal; Pierre-André Michel; Damiano Piovesan; Silvio C. E. Tosatto; Amos Bairoch (Bioinform., 2020)

The neXtProt knowledgebase in 2020: data, tools and usability improvements. - Monique Zahn-Zabal; Pierre-André Michel; Alain Gateau; Frédéric Nikitin; Mathieu Schaeffer; Estelle Audot; Pascale Gaudet; Paula Duek Roggli; Daniel Dinis Teixeira; Valentine Rech de Laval; Kasun Samarasinghe; Amos Bairoch; et al. (Nucleic Acids Res., 2020)

The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST). - Vasundra Touré; Steven Vercruysse; Marcio Luis Acencio; Ruth C. Lovering; Sandra E. Orchard; Glyn Bradley; Cristina Casals-Casas; Claudine Chaouiya; Noemi del-Toro; Åsmund Flobak; Pascale Gaudet; Henning Hermjakob; et al. (Bioinform., 2021)

The Gene Ontology resource: enriching a GOld mine. - Seth Carbon; Eric Douglass; Benjamin M. Good; Deepak R. Unni; Nomi L. Harris; Christopher J. Mungall; Siddartha Basu; Rex L. Chisholm; Robert J. Dodson; Eric Hartline; Petra Fey; Paul D. Thomas; et al. (Nucleic Acids Res., 2021)

DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation. - Federica Quaglia; Bálint Mészáros; Edoardo Salladini; András Hatos; Rita Pancsa; Lucía B. Chemes; Mátyás Pajkos; Tamas Lazar; Samuel Peña-Díaz; Jaime Santos; Veronika Ács; Nazanin Farahi; et al. (Nucleic Acids Res., 2022)

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI). - Sabrina Toro; Anna V. Anagnostopoulos; Sue Bello; Kai Lewis Blumberg; Rhiannon Cameron; Leigh Carmody; Alexander D. Diehl; Damion M. Dooley; William D. Duncan; Petra Fey; Pascale Gaudet; Nomi L. Harris; et al. (CoRR, 2023)

Annotation of biologically relevant ligands in UniProtKB using ChEBI. - Elisabeth Coudert; Sebastien Gehant; Edouard De Castro; Monica Pozzato; Delphine Baratin; Teresa Batista Neto; Christian J. A. Sigrist; Nicole Redaschi; Alan J. Bridge; Lucila Aimo; Ghislaine Argoud-Puy; Andrea H. Auchincloss; et al. (Bioinform., 2023)

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI). - Sabrina Toro; Anna V. Anagnostopoulos; Susan M. Bello; Kai Lewis Blumberg; Rhiannon Cameron; Leigh Carmody; Alexander D. Diehl; Damion M. Dooley; William D. Duncan; Petra Fey; Pascale Gaudet; Nomi L. Harris; et al. (J. Biomed. Semant., 2024)

New and revised gene ontology biological process terms describe multiorganism interactions critical for understanding microbial pathogenesis and sequences of concern. - Gene Godbold; Jody Proescher; Pascale Gaudet (J. Biomed. Semant., 2025)