The ASTRAL compendium for protein structure and sequence analysis. - Steven E. Brenner; Patrice Koehl; Michael Levitt 001 (Nucleic Acids Res., 2000)

Algorithmic issues in modeling motion. - Pankaj K. Agarwal; Leonidas J. Guibas; Herbert Edelsbrunner; Jeff Erickson 001; Michael Isard; Sariel Har-Peled; John Hershberger 001; Christian S. Jensen; Lydia E. Kavraki; Patrice Koehl; Ming C. Lin; Dinesh Manocha; et al. (ACM Comput. Surv., 2002)

ASTRAL compendium enhancements. - John-Marc Chandonia; Nigel S. Walker; Loredana Lo Conte; Patrice Koehl; Michael Levitt 001; Steven E. Brenner (Nucleic Acids Res., 2002)

The Area Derivative of a Space-Filling Diagram. - Robert L. Bryant; Herbert Edelsbrunner; Patrice Koehl; Michael Levitt 001 (Discret. Comput. Geom., 2004)

The ASTRAL Compendium in 2004. - John-Marc Chandonia; Gary Chung Hon; Nigel S. Walker; Loredana Lo Conte; Patrice Koehl; Michael Levitt 001; Steven E. Brenner (Nucleic Acids Res., 2004)

Inverse Kinematics in Biology: The Protein Loop Closure Problem. - Rachel Kolodny; Leonidas J. Guibas; Michael Levitt 001; Patrice Koehl (Int. J. Robotics Res., 2005)

Geometric filtering of pairwise atomic interactions applied to the design of efficient statistical potentials. - Afra Zomorodian; Leonidas J. Guibas; Patrice Koehl (Comput. Aided Geom. Des., 2006)

PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics. - Cyril Azuara; Erik Lindahl; Patrice Koehl; Henri Orland; Marc Delarue (Nucleic Acids Res., 2006)

NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis. - Erik Lindahl; Cyril Azuara; Patrice Koehl; Marc Delarue (Nucleic Acids Res., 2006)

A Geometric Representation of Protein Sequences. - Shengyin Gu; Olivier Poch; Bernd Hamann; Patrice Koehl (BIBM, 2007)

MinActionPath: maximum likelihood trajectory for large-scale structural transitions in a coarse-grained locally harmonic energy landscape. - Joel Franklin; Patrice Koehl; Sebastian Doniach; Marc Delarue (Nucleic Acids Res., 2007)

Visual Analysis of Biomolecular Surfaces. - Vijay Natarajan; Patrice Koehl; Yusu Wang 001; Bernd Hamann (Visualization in Medicine and Life Sciences, 2008)

Adaptive surface meshes coarsening with guaranteed quality and topology. - Xinwei Shi; Patrice Koehl (CGI, 2009)

Sampling the conformation of protein surface residues for flexible protein docking. - Patricia Francis-Lyon; Shengyin Gu; Joel Hass; Nina Amenta; Patrice Koehl (BMC Bioinform., 2010)

A quality metric for homology modeling: the H-factor. - Eric di Luccio; Patrice Koehl (BMC Bioinform., 2011)

Adaptive skin meshes coarsening for biomolecular simulation. - Xinwei Shi; Patrice Koehl (Comput. Aided Geom. Des., 2011)

Geometric measures of large biomolecules: Surface, volume, and pockets. - Paul Mach; Patrice Koehl (J. Comput. Chem., 2011)

AquaSAXS: a web server for computation and fitting of SAXS profiles with non-uniformally hydrated atomic models. - Frédéric Poitevin; Henri Orland; Sebastian Doniach; Patrice Koehl; Marc Delarue (Nucleic Acids Res., 2011)

The H-factor as a novel quality metric for homology modeling. - Eric di Luccio; Patrice Koehl (J. Clin. Bioinform., 2012)

Fast Recursive Computation of 3D Geometric Moments from Surface Meshes. - Patrice Koehl (IEEE Trans. Pattern Anal. Mach. Intell., 2012)

Globally Optimal Cortical Surface Matching with Exact Landmark Correspondence. - Alex Tsui; Devin Fenton; Phong Vuong; Joel Hass; Patrice Koehl; Nina Amenta; David Coeurjolly; Charles DeCarli; Owen T. Carmichael (IPMI, 2013)

An analytical method for computing atomic contact areas in biomolecules. - Paul Mach; Patrice Koehl (J. Comput. Chem., 2013)

Identifying essential pairwise interactions in elastic network model using the alpha shape theory. - Fei Xia; Dudu Tong; Lifeng Yang; Dayong Wang; Steven C. H. Hoi; Patrice Koehl; Lanyuan Lu (J. Comput. Chem., 2014)

Automatic Alignment of Genus-Zero Surfaces. - Patrice Koehl; Joel Hass (IEEE Trans. Pattern Anal. Mach. Intell., 2014)

String kernels for protein sequence comparisons: improved fold recognition. - Saghi Nojoomi; Patrice Koehl (BMC Bioinform., 2017)

A weighted string kernel for protein fold recognition. - Saghi Nojoomi; Patrice Koehl (BMC Bioinform., 2017)

Comparing shapes of genus-zero surfaces. - Joel Hass; Patrice Koehl (J. Appl. Comput. Topol., 2017)

Eleven quick tips for running an interdisciplinary short course for new graduate students. - Timothy E. Saunders; Cynthia Y. He; Patrice Koehl; Lee-Ling Sharon Ong; Peter T. C. So (PLoS Comput. Biol., 2018)

Parameterizing elastic network models to capture the dynamics of proteins. - Patrice Koehl; Henri Orland; Marc Delarue (J. Comput. Chem., 2021)

Stable Evaluation of 3D Zernike Moments for Surface Meshes. - Jérôme Houdayer; Patrice Koehl (Algorithms, 2022)

Computing the Volume, Surface Area, Mean, and Gaussian Curvatures of Molecules and Their Derivatives. - Patrice Koehl; Arseniy V. Akopyan; Herbert Edelsbrunner (J. Chem. Inf. Model., 2023)

Computing the Gromov-Wasserstein Distance between Two Surface Meshes Using Optimal Transport. - Patrice Koehl; Marc Delarue; Henri Orland (Algorithms, 2023)

A Physicist's View on Partial 3D Shape Matching. - Patrice Koehl; Henri Orland (Algorithms, 2023)

A General Statistical Physics Framework for Assignment Problems. - Patrice Koehl; Henri Orland (Algorithms, 2024)