MinPD: Distance-Based Phylogenetic Analysis and Recombination Detection of Serially-Sampled HIV Quasispecies. - Patricia Buendia; Giri Narasimhan (CSB, 2004)

Reconstructing Ancestor-Descendant Lineages from Serially-Sampled Data: A Comparison Study. - Patricia Buendia; Timothy M. Collins; Giri Narasimhan (International Conference on Computational Science (2), 2006)

Serial NetEvolve: a flexible utility for generating serially-sampled sequences along a tree or recombinant network. - Patricia Buendia; Giri Narasimhan (Bioinform., 2006)

Reconstructing Mutational Pathways from Serial Evolutionary Trees. - Patricia Buendia (BIBE, 2007)

Searching for Recombinant Donors in a Phylogenetic Network of Serial Samples. - Patricia Buendia; Giri Narasimhan (ISBRA, 2007)

Sliding MinPD: building evolutionary networks of serial samples via an automated recombination detection approach. - Patricia Buendia; Giri Narasimhan (Bioinform., 2007)

The role of internal node sequences and the molecular clock in the analysis of serially-sampled data. - Patricia Buendia; Timothy M. Collins; Giri Narasimhan (Int. J. Bioinform. Res. Appl., 2008)

A phylogenetic and Markov model approach for the reconstruction of mutational pathways of drug resistance. - Patricia Buendia; Brice Cadwallader; Victor DeGruttola (Bioinform., 2009)

Serial evolutionary networks of within-patient HIV-1 sequences reveal patterns of evolution of X4 strains. - Patricia Buendia; Giri Narasimhan (BMC Syst. Biol., 2009)

From ESTs to ESRs: Comparative analysis of mutually exclusive exons in 15 species of insects. - Patricia Buendia; Shu-Ning Hsu; Akira Chiba; John Tyree; Robert Loredo (ICCABS, 2011)

Cancer Data Integration and Querying with GeneTegra. - E. Patrick Shironoshita; Yves R. Jean-Mary; Ray M. Bradley; Patricia Buendia; Mansur R. Kabuka (DILS, 2012)

The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS). - Bjoern H. Menze; András Jakab; Stefan Bauer; Jayashree Kalpathy-Cramer; Keyvan Farahani; Justin S. Kirby; Yuliya Burren; Nicole Porz; Johannes Slotboom; Roland Wiest; Levente Lanczi; Elizabeth R. Gerstner; et al. (IEEE Trans. Medical Imaging, 2015)