GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data. - Juan M. Vaquerizas; Lucía Conde; Patricio Yankilevich; Amaya Cabezón; Pablo Minguez; Ramón Díaz-Uriarte; Fátima Al-Shahrour; Javier Herrero; Joaquín Dopazo (Nucleic Acids Res., 2005)

An Integrated Time Series Gene Expression Data Analysis Pipeline with a Fuzzy Clustering Method to Assess Expression Patterns. - Patricio Yankilevich; Paola R. Barrero; Igor Zwir (FUZZ-IEEE, 2007)

IDconverter and IDClight: Conversion and annotation of gene and protein IDs. - Andreu Alibés; Patricio Yankilevich; Andrés Cañada; Ramón Díaz-Uriarte (BMC Bioinform., 2007)

INSECT: IN-silico SEarch for Co-occurring Transcription factors. - Cristian Oscar Rohr; R. Gonzalo Parra; Patricio Yankilevich; Carolina Perez-Castro (Bioinform., 2013)

INSECT 2.0: a web-server for genome-wide cis-regulatory modules prediction. - R. Gonzalo Parra; Cristian Oscar Rohr; Daniel Koile; Carolina Perez-Castro; Patricio Yankilevich (Bioinform., 2016)

GenIO: a phenotype-genotype analysis web server for clinical genomics of rare diseases. - Daniel Koile; Marta Cordoba; Maximiliano de Sousa Serro; Marcelo Andres Kauffman; Patricio Yankilevich (BMC Bioinform., 2018)

A pan-cancer somatic mutation embedding using autoencoders. - Martin Palazzo; Pierre Beauseroy; Patricio Yankilevich (BMC Bioinform., 2019)

Unsupervised feature selection for tumor profiles using autoencoders and kernel methods. - Martin Palazzo; Pierre Beauseroy; Patricio Yankilevich (CIBCB, 2020)

Latent regularization for feature selection using kernel methods in tumor classification. - Martin Palazzo; Patricio Yankilevich; Pierre Beauseroy (CoRR, 2020)