ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. - Martin Morgan; Simon Anders; Michael F. Lawrence; Patrick Aboyoun; Hervé Pagès; Robert Gentleman (Bioinform., 2009)

Software for Computing and Annotating Genomic Ranges. - Michael F. Lawrence; Wolfgang Huber; Hervé Pagès; Patrick Aboyoun; Marc Carlson; Robert Gentleman; Martin T. Morgan; Vincent J. Carey (PLoS Comput. Biol., 2013)