Validation of an agent based system using Petri Nets. - Thomas Moncion; Guillaume Hutzler; Patrick Amar (AAMAS, 2005)

Validation d'une simulation à base d'agents par l'utilisation d'un réseau de Petri (article court). - Thomas Moncion; Guillaume Hutzler; Patrick Amar (JFSMA, 2005)

A stochastic automaton shows how enzyme assemblies may contribute to metabolic efficiency. - Patrick Amar; Guillaume Legent; Michel Thellier; Camille Ripoll; Gilles Bernot; Thomas Nyström; Milton H. Saier Jr.; Vic Norris (BMC Syst. Biol., 2008)

BioNetCAD: design, simulation and experimental validation of synthetic biochemical networks. - Stéphanie Rialle; Liza Figueredo Felicori; Camila Dias-Lopes; Sabine Pérès; Sanaâ El Atia; Alain R. Thierry; Patrick Amar; Franck Molina (Bioinform., 2010)

Computing with bacterial constituents, cells and populations: from bioputing to bactoputing. - Vic Norris; Abdallah Zemirline; Patrick Amar; Jean Nicolas Audinot; Pascal Ballet; Eshel Ben-Jacob; Gilles Bernot; Guillaume Beslon; Armelle Cabin; Eric Fanchon; Jean-Louis Giavitto; Nicolas Glade; et al. (Theory Biosci., 2011)

HSIM: A Hybrid Stochastic Simulation System for Systems Biology. - Patrick Amar; Loïc Paulevé (SASB, 2012)

Contributions à l'étude de la dynamique des systèmes biologiques et aux systèmes de calcul en biologie synthétique. (Contributions to the study of the dynamics of biological systems and to computing systems in synthetic biology). - Patrick Amar (2013)

Parallel Biological In Silico Simulation. - Patrick Amar; Muriel Baillieul; Dominique Barth; Bertrand Le Cun; Franck Quessette; Sandrine Vial (ISCIS, 2014)