rRNA: mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments. - Patrick B. F. O'Connor; Gene-Wei Li; Jonathan S. Weissman; John F. Atkins; Pavel V. Baranov (Bioinform., 2013)

GWIPS-viz: development of a ribo-seq genome browser. - Audrey M. Michel; Gearoid Fox; Anmol M. Kiran; Christof De Bo; Patrick B. F. O'Connor; Stephen M. Heaphy; James P. A. Mullan; Claire A. Donohue; Desmond G. Higgins; Pavel V. Baranov (Nucleic Acids Res., 2014)

GWIPS-viz: 2018 update. - Audrey M. Michel; Stephen J. Kiniry; Patrick B. F. O'Connor; James P. A. Mullan; Pavel V. Baranov (Nucleic Acids Res., 2018)

Trips-Viz: a transcriptome browser for exploring Ribo-Seq data. - Stephen J. Kiniry; Patrick B. F. O'Connor; Audrey M. Michel; Pavel V. Baranov (Nucleic Acids Res., 2019)