Measurement of genome-wide RNA synthesis and decay rates with Dynamic Transcriptome Analysis (DTA). - Björn Schwalb; Daniel Schulz; Mai Sun; Benedikt Zacher; Sebastian Dümcke; Dietmar E. Martin; Patrick Cramer; Achim Tresch (Bioinform., 2012)

MC EMiNEM Maps the Interaction Landscape of the Mediator. - Theresa Niederberger; Stefanie Etzold; Michael Lidschreiber; Kerstin C. Maier; Dietmar E. Martin; Holger Fröhlich; Patrick Cramer; Achim Tresch (PLoS Comput. Biol., 2012)

RNA velocity of single cells. - Gioele La Manno; Ruslan A. Soldatov; Amit Zeisel; Emelie Braun; Hannah Hochgerner; Viktor Petukhov; Katja Lidschreiber; Maria E. Kastriti; Peter Lönnerberg; Alessandro Furlan; Jean Fan; Lars E. Borm; et al. (Nat., 2018)

The interaction landscape between transcription factors and the nucleosome. - Fangjie Zhu; Lucas Farnung; Eevi Kaasinen; Biswajyoti Sahu; Yimeng Yin; Bei Wei; Svetlana O. Dodonova; Kazuhiro R. Nitta; Ekaterina Morgunova; Minna Taipale; Patrick Cramer; Jussi Taipale (Nat., 2018)