Toward a Census of Bacteria in Soil. - Patrick D. Schloss; Jo Handelsman (PLoS Comput. Biol., 2006)

A statistical toolbox for metagenomics: assessing functional diversity in microbial communities. - Patrick D. Schloss; Jo Handelsman (BMC Bioinform., 2008)

Automated GMP production of [11C]PR04.MZ via the captive solvent method and PET studies in non-human primates: A promising tracer for extrastriatal DAT imaging. - Patrick J. Riss; Jacob M. Hooker; David L. Alexoff; Sung-Won Kim; Rene Hummerich; Valentina Ferrari; Patrick D. Schloss; Joanna S. Fowler; Frank Roesch; Franklin I. Aigbirhio (NeuroImage, 2010)

The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies. - Patrick D. Schloss (PLoS Comput. Biol., 2010)

Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome. - Sahar Abubucker; Nicola Segata; Johannes Goll; Alyxandria M. Schubert; Jacques Izard; Brandi L. Cantarel; Beltran Rodriguez-Mueller; Jeremy Zucker; Mathangi Thiagarajan; Bernard Henrissat; Owen White; Scott T. Kelley; et al. (PLoS Comput. Biol., 2012)

Bioinformatics for the Human Microbiome Project. - Dirk Gevers; Mihai Pop; Patrick D. Schloss; Curtis Huttenhower (PLoS Comput. Biol., 2012)

Biogeography and environmental conditions shape bacteriophage-bacteria networks across the human microbiome. - Geoffrey D. Hannigan; Melissa Beth Duhaime; Danai Koutra; Patrick D. Schloss (PLoS Comput. Biol., 2018)

Ten simple rules to increase computational skills among biologists with Code Clubs. - Ada K. Hagan; Nicholas A. Lesniak; Marcy J. Balunas; Lucas Bishop; William L. Close; Matthew D. Doherty; Amanda G. Elmore; Kaitlin J. Flynn; Geoffrey D. Hannigan; Charlie C. Koumpouras; Matthew L. Jenior; Ariangela J. Kozik; et al. (PLoS Comput. Biol., 2020)

mikropml: User-Friendly R Package for Supervised Machine Learning Pipelines. - Begüm D. Topçuoglu; Zena Lapp; Kelly L. Sovacool; Evan S. Snitkin; Jenna Wiens; Patrick D. Schloss (J. Open Source Softw., 2021)

Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful? - Awan Afiaz; Andrey Ivanov; John Chamberlin; David Hanauer; Candace Savonen; Mary J. Goldman; Martin Morgan; Michael Reich; Alexander Getka; Aaron Holmes; Sarthak Pati; Dan Knight; et al. (CoRR, 2023)