Modeling Bi-modality Improves Characterization of Cell Cycle on Gene Expression in Single Cells. - Andrew McDavid; Lucas Dennis; Patrick Danaher; Greg Finak; Michael Krouse; Alice Wang; Philippa Webster; Joseph Beechem; Raphael Gottardo (PLoS Comput. Biol., 2014)

SpatialCTD: A Large-Scale Tumor Microenvironment Spatial Transcriptomic Dataset to Evaluate Cell Type Deconvolution for Immuno-Oncology. - Jiayuan Ding; Lingxiao Li; Qiaolin Lu; Julian Venegas; Yixin Wang 003; Lidan Wu; Wei Jin 009; Hongzhi Wen; Renming Liu; Wenzhuo Tang; Xinnan Dai; Zhaoheng Li; et al. (J. Comput. Biol., 2024)

Deep Learning in Single-cell Analysis. - Dylan Molho; Jiayuan Ding; Wenzhuo Tang; Zhaoheng Li; Hongzhi Wen; Yixin Wang 003; Julian Venegas; Wei Jin 009; Renming Liu; Runze Su; Patrick Danaher; Robert Yang; et al. (ACM Trans. Intell. Syst. Technol., 2024)