Attaching Cloud Storage to a Campus Grid Using Parrot, Chirp, and Hadoop. - Patrick Donnelly; Peter Bui; Douglas Thain (CloudCom, 2010)

Fine-Grained Access Control in the Chirp Distributed File System. - Patrick Donnelly; Douglas Thain (CCGRID, 2012)

Makeflow: a portable abstraction for data intensive computing on clusters, clouds, and grids. - Michael Albrecht; Patrick Donnelly; Peter Bui; Douglas Thain (SWEET@SIGMOD, 2012)

Scripting distributed scientific workflows using Weaver. - Peter Bui; Li Yu; Andrew Thrasher; Rory Carmichael; Irena Lanc; Patrick Donnelly; Douglas Thain (Concurr. Comput. Pract. Exp., 2012)

Design of an active storage cluster file system for DAG workflows. - Patrick Donnelly; Douglas Thain (DISCS@SC, 2013)

Confuga: Scalable Data Intensive Computing for POSIX Workflows. - Patrick Donnelly; Nicholas L. Hazekamp; Douglas Thain (CCGRID, 2015)

Scaling Data Intensive Physics Applications to 10k Cores on Non-dedicated Clusters with Lobster. - Anna Woodard; Matthias Wolf 003; Charles Mueller; Nil Valls; Ben Tovar; Patrick Donnelly; Peter Ivie; Kenyi Hurtado Anampa; Paul R. Brenner; Douglas Thain; Kevin Lannon; Michael D. Hildreth (CLUSTER, 2015)

Learning a Sparse Database for Patch-Based Medical Image Segmentation. - Moti Freiman; Hannes Nickisch; Holger Schmitt; Pál Maurovich-Horvat; Patrick Donnelly; Mani Vembar; Liran Goshen (Patch-MI@MICCAI, 2017)

Balancing push and pull in Confuga, an active storage cluster file system for scientific workflows. - Patrick Donnelly; Douglas Thain (Concurr. Comput. Pract. Exp., 2017)

Cudele: An API and Framework for Programmable Consistency and Durability in a Global Namespace. - Michael A. Sevilla; Ivo Jimenez; Noah Watkins; Jeff LeFevre; Peter Alvaro; Shel Finkelstein; Patrick Donnelly; Carlos Maltzahn (IPDPS, 2018)

Improving CCTA based lesions' hemodynamic significance assessment by accounting for partial volume modeling in automatic coronary lumen segmentation. - Moti Freiman; Hannes Nickisch; Sven Prevrhal; Holger Schmitt; Mani Vembar; Pál Maurovich-Horvat; Patrick Donnelly; Liran Goshen (CoRR, 2019)

Concatenative Phonetic Synthesis for the Proto-Indo-European Language. - Patrick Donnelly (ICNLSP, 2022)