TAMAL: an integrated approach to choosing SNPs for genetic studies of human complex traits. - Bradley M. Hemminger; Billy Saelim; Patrick F. Sullivan (Bioinform., 2006)

Simulating association studies: a data-based resampling method for candidate regions or whole genome scans. - Fred A. Wright; Hanwen Huang; Xiaojun Guan; Kevin Gamiel; Clark D. Jeffries; William T. Barry; Fernando Pardo-Manuel de Villena; Patrick F. Sullivan; Kirk C. Wilhelmsen; Fei Zou (Bioinform., 2007)

Comparison of full-text searching to metadata searching for genes in two biomedical literature cohorts. - Bradley M. Hemminger; Billy Saelim; Patrick F. Sullivan; Todd J. Vision (J. Assoc. Inf. Sci. Technol., 2007)

A quality control algorithm for filtering SNPs in genome-wide association studies. - Monnat Pongpanich; Patrick F. Sullivan; Jung-Ying Tzeng (Bioinform., 2010)

zCall: a rare variant caller for array-based genotyping: Genetics and population analysis. - Jacqueline I. Goldstein; Andrew Crenshaw; Jason P. Carey; George B. Grant; Jared Maguire; Menachem Fromer; Colm O'Dushlaine; Jennifer L. Moran; Kimberly Chambert; Christine Stevens; Pamela Sklar; Christina M. Hultman; et al. (Bioinform., 2012)

seeQTL: a searchable database for human eQTLs. - Kai Xia; Andrey A. Shabalin; Shunping Huang; Vered Madar; Yi-Hui Zhou; Wei Wang 010; Fei Zou; Wei Sun 006; Patrick F. Sullivan; Fred A. Wright (Bioinform., 2012)

Flexible and robust co-regularized multi-domain graph clustering. - Wei Cheng 002; Xiang Zhang 001; Zhishan Guo; Yubao Wu; Patrick F. Sullivan; Wei Wang 010 (KDD, 2013)

MethylPCA: a toolkit to control for confounders in methylome-wide association studies. - Wenan Chen; Guimin Gao; Srilaxmi Nerella; Christina M. Hultman; Patrik K. E. Magnusson; Patrick F. Sullivan; Karolina A. Åberg; Edwin J. C. G. van den Oord (BMC Bioinform., 2013)

A hidden Markov random field-based Bayesian method for the detection of long-range chromosomal interactions in Hi-C data. - Zheng Xu 010; Guosheng Zhang; Fulai Jin; Mengjie Chen; Terrence S. Furey; Patrick F. Sullivan; Zhaohui S. Qin; Ming Hu 001; Yun Li (Bioinform., 2016)

HUGIn: Hi-C Unifying Genomic Interrogator. - Joshua S. Martin; Zheng Xu 010; Alex P. Reiner; Karen L. Mohlke; Patrick F. Sullivan; Bing Ren; Ming Hu 001; Yun Li (Bioinform., 2017)

Sequencing and de novo assembly of 150 genomes from Denmark as a population reference. - Lasse Maretty; Jacob Malte Jensen; Bent Petersen; Jonas Andreas Sibbesen; Siyang Liu 007; Palle Villesen; Laurits Skov; Kirstine Belling; Christian Theil Have; José M. G. Izarzugaza; Marie Grosjean; Jette Bork-Jensen; et al. (Nat., 2017)

Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios. - Maria Luisa Matey-Hernandez; Lasse Maretty; Jacob Malte Jensen; Bent Petersen; Jonas Andreas Sibbesen; Siyang Liu 007; Palle Villesen; Laurits Skov; Kirstine Belling; Christian Theil Have; José M. G. Izarzugaza; Marie Grosjean; et al. (BMC Bioinform., 2018)

A structural variation reference for medical and population genetics. - Ryan L. Collins; Harrison Brand; Konrad J. Karczewski; Xuefang Zhao; Jessica Alföldi; Laurent C. Francioli; Amit V. Khera; Chelsea Lowther; Laura D. Gauthier; Harold Wang; Nicholas A. Watts; Matthew Solomonson; et al. (Nat., 2020)

Association test using Copy Number Profile Curves (CONCUR) enhances power in rare copy number variant analysis. - Amanda Brucker; Wenbin Lu; Rachel Marceau West; Qi-You Yu; Chuhsing Kate Hsiao; Tzu-Hung Hsiao; Ching-Heng Lin; Patrik K. E. Magnusson; Patrick F. Sullivan; Jin P. Szatkiewicz; Tzu-Pin Lu; Jung-Ying Tzeng (PLoS Comput. Biol., 2020)