A Genome-Scale Metabolic Reconstruction of Mycoplasma genitalium, iPS189. - Patrick F. Suthers; Madhukar S. Dasika; Vinay Satish Kumar; Gennady Denisov; John I. Glass; Costas D. Maranas (PLoS Comput. Biol., 2009)

OptForce: An Optimization Procedure for Identifying All Genetic Manipulations Leading to Targeted Overproductions. - Sridhar Ranganathan; Patrick F. Suthers; Costas D. Maranas (PLoS Comput. Biol., 2010)

MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databases. - Akhil Kumar 003; Patrick F. Suthers; Costas D. Maranas (BMC Bioinform., 2012)