SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data. - Murray P. Cox; Daniel A. Peterson; Patrick J. Biggs (BMC Bioinform., 2010)

Environmental bio-monitoring with high-throughput sequencing. - Jing Wang 056; Patricia A. McLenachan; Patrick J. Biggs; Linton H. Winder; Barbara I. K. Schoenfeld; Vinay V. Narayan; Bernard J. Phiri; Peter J. Lockhart (Briefings Bioinform., 2013)

Robust Identification of Noncoding RNA from Transcriptomes Requires Phylogenetically-Informed Sampling. - Stinus Lindgreen; Sinan Ugur Umu; Alicia Sook-Wei Lai; Hisham Eldai; Wenting Liu; Stephanie McGimpsey; Nicole E. Wheeler; Patrick J. Biggs; Nick R. Thomson; Lars Barquist; Anthony M. Poole; Paul P. Gardner (PLoS Comput. Biol., 2014)

The sismonr Package: Simulation of In Silico Multi-Omic Networks in R. - Olivia Angelin-Bonnet; Patrick J. Biggs; Matthieu Vignes (BIBM, 2018)

sismonr: simulation of in silico multi-omic networks with adjustable ploidy and post-transcriptional regulation in R. - Olivia Angelin-Bonnet; Patrick J. Biggs; Samantha J. Baldwin; Susan Thomson 003; Matthieu Vignes (Bioinform., 2020)

Out of (the) bag - encoding categorical predictors impacts out-of-bag samples. - Helen L. Smith; Patrick J. Biggs; Nigel French; Adam N. H. Smith; Jonathan C. Marshall (PeerJ Comput. Sci., 2024)

Lost in the Forest: Encoding categorical variables and the absent levels problem. - Helen L. Smith; Patrick J. Biggs; Nigel French; Adam N. H. Smith; Jonathan C. Marshall (Data Min. Knowl. Discov., 2024)