Characterization of the SOS meta-regulon in the human gut microbiome. - Joseph P. Cornish; Neus Sanchez-Alberola; Patrick K. O'Neill; Ronald O'Keefe; Jameel Gheba; Ivan Erill (Bioinform., 2014)

Informational Requirements for Transcriptional Regulation. - Patrick K. O'Neill; Robert Forder; Ivan Erill (J. Comput. Biol., 2014)

A Bayesian inference method for the analysis of transcriptional regulatory networks in metagenomic data. - Elizabeth T. Hobbs; Talmo Pereira; Patrick K. O'Neill; Ivan Erill (Algorithms Mol. Biol., 2016)

Parametric bootstrapping for biological sequence motifs. - Patrick K. O'Neill; Ivan Erill (BMC Bioinform., 2016)

BIITE: A Tool to Determine HLA Class II Epitopes from T Cell ELISpot Data. - Lies Boelen; Patrick K. O'Neill; Kathryn J. Quigley; Catherine J. Reynolds; Bernard Maillere; John H. Robinson; Ganjana Lertmemongkolchai; Daniel M. Altmann; Rosemary J. Boyton; Becca Asquith (PLoS Comput. Biol., 2016)

Cross-Language Transfer Learning and Domain Adaptation for End-to-End Automatic Speech Recognition. - Jian Luo 007; Jianzong Wang; Ning Cheng 001; Edward Xiao; Jing Xiao 006; Georg Kucsko; Patrick K. O'Neill; Jagadeesh Balam; Slyne Deng; Adriana Flores; Boris Ginsburg; Jocelyn Huang; et al. (ICME, 2021)

SPGISpeech: 5, 000 Hours of Transcribed Financial Audio for Fully Formatted End-to-End Speech Recognition. - Patrick K. O'Neill; Vitaly Lavrukhin; Somshubra Majumdar; Vahid Noroozi; Yuekai Zhang; Oleksii Kuchaiev; Jagadeesh Balam; Yuliya Dovzhenko; Keenan Freyberg; Michael D. Shulman; Boris Ginsburg; Shinji Watanabe 001; et al. (Interspeech, 2021)