ArrayExpress - a public repository for microarray gene expression data at the EBI. - Alvis Brazma; Helen E. Parkinson; Ugis Sarkans; Mohammadreza Shojatalab; Jaak Vilo; Niran Abeygunawardena; Ele Holloway; Misha Kapushesky; Patrick Kemmeren; Gonzalo Garcia Lara; Ahmet Oezcimen; Philippe Rocca-Serra; et al. (Nucleic Acids Res., 2003)

Expression Profiler: next generation - an online platform for analysis of microarray data. - Misha Kapushesky; Patrick Kemmeren; Aedín C. Culhane; Steffen Durinck; Jan Ihmels; Christine Körner; Meelis Kull; Aurora Torrente; Ugis Sarkans; Jaak Vilo; Alvis Brazma (Nucleic Acids Res., 2004)

Predicting gene function through systematic analysis and quality assessment of high-throughput data. - Patrick Kemmeren; Thessa T. J. P. Kockelkorn; Theo Bijma; Rogier Donders; Frank C. P. Holstege (Bioinform., 2005)

The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic interaction pattern. - Saman Amini; Annika Jacobsen; Olga Ivanova; Philip Lijnzaad; Jaap Heringa; Frank C. P. Holstege; K. Anton Feenstra; Patrick Kemmeren (PLoS Comput. Biol., 2019)

A framework for exhaustive modelling of genetic interaction patterns using Petri nets. - Annika Jacobsen; Olga Ivanova; Saman Amini; Jaap Heringa; Patrick Kemmeren; K. Anton Feenstra (Bioinform., 2020)