Genome-scale reconstruction and system level investigation of the metabolic network of Methylobacterium extorquens AM1. - Rémi Peyraud; Kathrin Schneider; Patrick Kiefer; Stéphane Massou; Julia A. Vorholt; Jean-Charles Portais (BMC Syst. Biol., 2011)

eMZed: an open source framework in Python for rapid and interactive development of LC/MS data analysis workflows. - Patrick Kiefer; Uwe Schmitt; Julia A. Vorholt (Bioinform., 2013)

ScalaFlux: A scalable approach to quantify fluxes in metabolic subnetworks. - Pierre Millard; Uwe Schmitt; Patrick Kiefer; Julia A. Vorholt; Stéphanie Heux; Jean-Charles Portais (PLoS Comput. Biol., 2020)