Visualizing associations between genome sequences and gene expression data using genome-mean expression profiles. - Derek Y. Chiang; Patrick O. Brown; Michael B. Eisen (ISMB (Supplement of Bioinformatics), 2001)

Missing value estimation methods for DNA microarrays. - Olga G. Troyanskaya; Michael N. Cantor; Gavin Sherlock; Patrick O. Brown; Trevor Hastie; Robert Tibshirani; David Botstein; Russ B. Altman (Bioinform., 2001)

The Stanford Microarray Database. - Gavin Sherlock; Tina Hernandez-Boussard; Andrew Kasarskis; Gail Binkley; John C. Matese; Selina S. Dwight; Miroslava Kaloper; Shuai Weng; Heng Jin; Catherine A. Ball; Michael B. Eisen; Paul T. Spellman; et al. (Nucleic Acids Res., 2001)

Nonparametric methods for identifying differentially expressed genes in microarray data. - Olga G. Troyanskaya; Mitchell E. Garber; Patrick O. Brown; David Botstein; Russ B. Altman (Bioinform., 2002)

SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data. - Maximilian Diehn; Gavin Sherlock; Gail Binkley; Heng Jin; John C. Matese; Tina Hernandez-Boussard; Christian A. Rees; J. Michael Cherry; David Botstein; Patrick O. Brown; Ash A. Alizadeh (Nucleic Acids Res., 2003)

The Stanford Microarray Database: data access and quality assessment tools. - Jeremy Gollub; Catherine A. Ball; Gail Binkley; Janos Demeter; David B. Finkelstein; Joan M. Hebert; Tina Hernandez-Boussard; Heng Jin; Miroslava Kaloper; John C. Matese; Mark Schroeder; Patrick O. Brown; et al. (Nucleic Acids Res., 2003)

Cancer characterization and feature set extraction by discriminative margin clustering. - Kamesh Munagala; Robert Tibshirani; Patrick O. Brown (BMC Bioinform., 2004)

The Stanford Microarray Database accommodates additional microarray platforms and data formats. - Catherine A. Ball; Ihab A. B. Awad; Janos Demeter; Jeremy Gollub; Joan M. Hebert; Tina Hernandez-Boussard; Heng Jin; John C. Matese; Michael Nitzberg; Farrell Wymore; Zachariah K. Zachariah; Patrick O. Brown; et al. (Nucleic Acids Res., 2005)

The Stanford Microarray Database: implementation of new analysis tools and open source release of software. - Janos Demeter; Catherine Beauheim; Jeremy Gollub; Tina Hernandez-Boussard; Heng Jin; Donald Maier; John C. Matese; Michael Nitzberg; Farrell Wymore; Zachariah K. Zachariah; Patrick O. Brown; Gavin Sherlock; et al. (Nucleic Acids Res., 2007)

The Stanford Tissue Microarray Database. - Robert J. Marinelli; Kelli Montgomery; Chih Long Liu; Nigam H. Shah; Wijan Prapong; Michael Nitzberg; Zachariah K. Zachariah; Gavin Sherlock; Yasodha Natkunam; Robert B. West; Matt van de Rijn; Patrick O. Brown; et al. (Nucleic Acids Res., 2008)