Prenet: Predictive network from ATAC-SEQ data. - Nazmus Salehin; Patrick P. L. Tam; Pierre Osteil (J. Bioinform. Comput. Biol., 2020)

Uncovering cell identity through differential stability with Cepo. - Hani Jieun Kim; Kevin Y. X. Wang; Carissa Chen; Yingxin Lin; Patrick P. L. Tam; David M. Lin; Jean Y. H. Yang; Pengyi Yang (Nat. Comput. Sci., 2021)

Integration of Computational Analysis and Spatial Transcriptomics in Single-cell Studies. - Ran Wang; Guangdun Peng; Patrick P. L. Tam; Naihe Jing (Genom. Proteom. Bioinform., 2023)