Knowledge Base Acquisition For Rare Concepts Using Manual Bootstrapping. - Patrick R. Alba; Scott L. DuVall; Joanne LaFleur; Adam Bress; Olga V. Patterson (AMIA, 2015)

Extraction of Vital Signs from Clinical Notes. - Olga V. Patterson; Makoto Jones; Yiwen Yao; Benjamin Viernes; Patrick R. Alba; Theodore J. Iwashyna; Scott L. DuVall (MedInfo, 2015)

The Super Annotator: A Method of Semi-Automated Rare Event Identification for Large Clinical Data Sets. - Patrick R. Alba; Olga V. Patterson; Benjamin Viernes; Daniel W. Denhalter; Nicole Bailey; Andrew Wilson; Aaron W. C. Kamauu; Scott L. DuVall (AMIA, 2016)

Large Scale Clinical Text Processing and Process Optimization. - Scott L. DuVall; Patrick R. Alba; Olga V. Patterson (AMIA, 2016)

An Introduction to Natural Language Processing Methods in Clinical Research. - Olga V. Patterson; Patrick R. Alba; Scott L. DuVall (AMIA, 2016)

Pathology Information Extraction in Bladder Cancer Surveillance. - Patrick R. Alba; Scott L. DuVall; Terri Elizabeth Workman; Florian Schroeck; Olga V. Patterson (AMIA, 2017)

Ankle Brachial Index Extraction System. - Patrick R. Alba; Scott L. DuVall; Daniel Norvell; Kathryn P. Moore; Joseph M. Czerniecki; Olga V. Patterson (AMIA, 2018)

A User-Friendly Interface for Concept Dictionary Expansion Using Word Embeddings and SNOMED-CT. - Alec B. Chapman; Patrick R. Alba; Brian T. Bucher; Scott L. DuVall; Olga V. Patterson (AMIA, 2018)

Fast and Accurate Adverse Drug Event labeling without a GPU. - Kelly S. Peterson; Alec B. Chapman; Patrick R. Alba; Scott L. DuVall; Olga V. Patterson (AMIA, 2018)

Hybrid system for adverse drug event detection. - Alec B. Chapman; Kelly S. Peterson; Patrick R. Alba; Scott L. DuVall; Olga V. Patterson (Medication and Adverse Drug Event Detection, 2018)

Automatic Methods to Extract Prescription Status Quality Measures from Unstructured Health Records. - Patrick R. Alba; Olga V. Patterson; Joshua S. Richman; Scott L. DuVall (MedInfo, 2019)

Using Enriched Samples for Semi-Automated Vocabulary Expansion to Identify Rare Events in Clinical Text: Sexual Orientation as a Use Case. - Kristine E. Lynch; Patrick R. Alba; Benjamin Viernes; Scott L. DuVall (MedInfo, 2019)

A Decade of Vaping: Identifying Shifts in Clinical Documentation and Terminology in the Department of Veterans Affairs (2010-2020). - Patrick R. Alba; Olga V. Patterson; Mike Conway (AMIA, 2020)

Removing barriers to clinical text processing with MedSpaCy. - Hannah Eyre; Olga V. Patterson; Jianlin Shi; Kelly S. Peterson; Alec B. Chapman; Patrick R. Alba; Scott L. DuVall (AMIA, 2020)

Vaping at the VA: Developing an Annotated Corpus of Electronic Cigarette Mentions in Clinical Notes at the Department of Veterans Affairs. - Mike Conway; Patrick R. Alba; Shu-Hong Zhu; Olga V. Patterson (AMIA, 2021)

Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python. - Hannah Eyre; Alec B. Chapman; Kelly S. Peterson; Jianlin Shi; Patrick R. Alba; Makoto M. Jones; Tamara L. Box; Scott L. DuVall; Olga V. Patterson (AMIA, 2021)

Development of a Natural Language Processing System to Identify Clinical Documentation of Electronic Cigarette Use. - Patrick R. Alba; Qiwei Gan; Mengke Hu; Shu-Hong Zhu; Scott E. Sherman; Scott L. DuVall; Mike Conway (MedInfo, 2023)

An NLP Framework for the Extraction of Concept Measurements from Radiology and Pathology Notes. - Annie E. Bowles; Cris Perez; Anil Vachani; Jennifer Steltz; Brent Rose; Alex K. Bryant; Hannah Eyre; Scott L. DuVall; Julie A. Lynch; Patrick R. Alba (MedInfo, 2023)

Toward Real-World Reproducibility: Verifying Value Sets for Clinical Research. - Scott L. DuVall; Craig G. Parker; Amanda R. Shields; Patrick R. Alba; Julie A. Lynch; Michael E. Matheny; Aaron W. C. Kamauu (MedInfo, 2023)

A deep learning approach for medication disposition and corresponding attributes extraction. - Qiwei Gan; Mengke Hu; Kelly S. Peterson; Hannah Eyre; Patrick R. Alba; Annie E. Bowles; Johnathan C. Stanley; Scott L. DuVall; Jianlin Shi (J. Biomed. Informatics, 2023)

Strategies for secondary use of real-world clinical and administrative data for outcome ascertainment in pragmatic clinical trials. - Cynthia Hau; Patricia A. Woods; Amanda S. Guski; Srihari I. Raju; Liang Zhu; Patrick R. Alba; William C. Cushman; Peter A. Glassman; Areef Ishani; Addison A. Taylor; Ryan E. Ferguson; Sarah Leatherman (J. Biomed. Informatics, 2024)

Accelerating Clinical NLP at Scale with a Hybrid Framework with Reduced GPU Demands: A Case Study in Dementia Identification. - Jianlin Shi; Qiwei Gan; Elizabeth Hanchrow; Annie E. Bowles; Johnathan C. Stanley; Adam Bress; Jordana B. Cohen; Patrick R. Alba (CoRR, 2025)