The Ocular Disease Ontology. - Patrick Ray; Alexander D. Diehl (ICBO, 2013)

The neurological disease ontology. - Mark Jensen; Alexander P. Cox; Naveed Chaudhry; Marcus Ng; Donat Sule; William D. Duncan; Patrick Ray; Bianca Weinstock-Guttman; Barry Smith 001; Alan Ruttenberg; Kinga Szigeti; Alexander D. Diehl (J. Biomed. Semant., 2013)

Applications of OBI 'assay'. - Mark Jensen; Alexander P. Cox; Jonathan P. Bona; William D. Duncan; Patrick L. Ray; Alexander D. Diehl (ICBO, 2014)

An Ontological Representation and Analysis of Patient-reported and Clinical Outcomes for Multiple Sclerosis. - Mark Jensen; Alexander P. Cox; Patrick Ray; Barbara E. Teter; Bianca Weinstock-Guttman; Alan Ruttenberg; Alexander D. Diehl (ICBO, 2014)

The Ontological Treatment of Sight and Blindness. - Patrick Ray; Alexander P. Cox; Mark Jensen; Alexander D. Diehl (ICBO, 2014)

Representing vision and blindness. - Patrick L. Ray; Alexander P. Cox; Mark Jensen; Travis Allen; William D. Duncan; Alexander D. Diehl (J. Biomed. Semant., 2016)

A user-friendly software package for VIC hydrologic model development. - Sungwook Wi; Patrick Ray; Eleonora M. C. Demaria; Scott Steinschneider; Casey Brown (Environ. Model. Softw., 2017)

Vulnerability assessment of drinking water supply under climate uncertainty using a river contamination risk (RANK) model. - Faranak Behzadi; Asphota Wasti; Todd E. Steissberg; Patrick Ray (Environ. Model. Softw., 2022)

Enabling dynamic emulation of high-dimensional model outputs: Demonstration for Mexico City groundwater management. - Jacob Tracy; Won Chang; Sarah St George Freeman; Casey Brown; Adriana Palma Nava; Patrick Ray (Environ. Model. Softw., 2022)

Bridging the Scientific Knowledge Gap and Reproducibility: A Survey of Provenance, Assertion and Evidence Ontologies. - Tek Raj Chhetri; Yaroslav O. Halchenko; Dorota Jarecka; Puja Trivedi; Satrajit S. Ghosh; Patrick Ray; Lydia Ng (WWW (Companion Volume), 2025)

The Cell Ontology in the age of single-cell omics. - Shawn Zheng Kai Tan; Aleix Puig-Barbe; Damien Goutte-Gattat; Caroline Eastwood; Brian D. Aevermann; Alida Avola; James P. Balhoff; Ismail Ugur Bayindir; Jasmine Belfiore; Anita R. Caron; David S. Fischer; Nancy George; et al. (CoRR, 2025)

STRUCTSENSE: A Task-Agnostic Agentic Framework for Structured Information Extraction with Human-In-The-Loop Evaluation and Benchmarking. - Tek Raj Chhetri; Yibei Chen; Puja Trivedi; Dorota Jarecka; Saif Haobsh; Patrick Ray; Lydia Ng; Satrajit S. Ghosh (CoRR, 2025)