A comparison of evolved finite state classifiers and interpolated Markov models for improving PCR primer design. - Daniel A. Ashlock; Scott J. Emrich; Kenneth Mark Bryden; Steven M. Corns; Tsui-Jung Wen; Patrick S. Schnable (CIBCB, 2004)

Picky: oligo microarray design for large genomes. - Hui-Hsien Chou; An-Ping Hsia; Denise L. Mooney; Patrick S. Schnable (Bioinform., 2004)

A strategy for assembling the maize (Zea mays L.) genome. - Scott J. Emrich; Srinivas Aluru; Yan Fu; Tsui-Jung Wen; Mahesh Narayanan; Ling Guo; Daniel A. Ashlock; Patrick S. Schnable (Bioinform., 2004)

Selection of Genetically Diverse Recombinant Inbreds with an Ordered Gene Evolutionary Algorithm. - Daniel A. Ashlock; Ruth Swanson; Patrick S. Schnable (CIBCB, 2005)

Consensus Genetic Maps: A Graph Theoretic Approach. - Benjamin G. Jackson; Srinivas Aluru; Patrick S. Schnable (CSB, 2005)

Using the biological taxonomy to access biological literature with PathBinderH. - Jing Ding; Karthikeyan Viswanathan; Daniel Berleant; Laron M. Hughes; Eve Syrkin Wurtele; Daniel A. Ashlock; Julie A. Dickerson; Andy W. Fulmer; Patrick S. Schnable (Bioinform., 2005)

Scanning microarrays at multiple intensities enhances discovery of differentially expressed genes. - David S. Skibbe; Xiujuan Wang; Xuefeng Zhao; Lisa A. Borsuk; Dan Nettleton; Patrick S. Schnable (Bioinform., 2006)

Assembling genomes on large-scale parallel computers. - Anantharaman Kalyanaraman; Scott J. Emrich; Patrick S. Schnable; Srinivas Aluru (J. Parallel Distributed Comput., 2007)

Assessing probe-specific dye and slide biases in two-color microarray data. - Ruixiao Lu; Geun-Cheol Lee; Michael Shultz; Chris Dardick; Kihong Jung; Jirapa Phetsom; Yi Jia; Robert H. Rice; Zelanna Goldberg; Patrick S. Schnable; Pamela C. Ronald; David M. Rocke (BMC Bioinform., 2008)

Consensus Genetic Maps as Median Orders from Inconsistent Sources. - Benjamin G. Jackson; Patrick S. Schnable; Srinivas Aluru (IEEE ACM Trans. Comput. Biol. Bioinform., 2008)

Assembly of Large Genomes from Paired Short Reads. - Benjamin G. Jackson; Patrick S. Schnable; Srinivas Aluru (BICoB, 2009)

Direct calibration of PICKY-designed microarrays. - Hui-Hsien Chou; Arunee Trisiriroj; Sunyoung Park; Yue-Ie C. Hsing; Pamela C. Ronald; Patrick S. Schnable (BMC Bioinform., 2009)

Parallel short sequence assembly of transcriptomes. - Benjamin G. Jackson; Patrick S. Schnable; Srinivas Aluru (BMC Bioinform., 2009)

Parallel de novo assembly of large genomes from high-throughput short reads. - Benjamin G. Jackson; Matthew Regennitter; Xiao Yang; Patrick S. Schnable; Srinivas Aluru (IPDPS, 2010)

An Efficient and Scalable Implementation of SNP-Pair Interaction Testing for Genetic Association Studies. - Lars Koesterke; Daniel Stanzione; Matthew W. Vaughn; Stephen M. Welch; Waclaw Kusnierczyk; Jinliang Yang; Cheng-Ting Yeh; Dan Nettleton; Patrick S. Schnable (IPDPS Workshops, 2011)

Algorithm for DNA copy number variation detection with read depth and paramorphism information. - Rong Shen; Kai Ying; Zhengdao Wang; Patrick S. Schnable (ICASSP, 2016)

A Bayesian Network approach to County-Level Corn Yield Prediction using historical data and expert knowledge. - Vikas Chawla; Hsiang Sing Naik; Adedotun Akintayo; Dermot Hayes; Patrick S. Schnable; Baskar Ganapathysubramanian; Soumik Sarkar (CoRR, 2016)

Tracking of water movement dynamics inside plants using leaf surface humidity sensors. - Seval Oren; Zhaokui Wang; Xinran Wang; Shawana Tabassum; Yueyi Jiao; Byron J. Montgomery; Nathan M. Neihart; Colton M. McNinch; Patrick S. Schnable; Liang Dong (NEMS, 2017)

Toward A Scalable Exploratory Framework for Complex High-Dimensional Phenomics Data. - Methun Kamruzzaman; Ananth Kalyanaraman; Bala Krishnamoorthy; Patrick S. Schnable (CoRR, 2017)

An automated tassel detection and trait extraction pipeline to support high-throughput field imaging of maize. - Snehal Shete; Srikant Srinivasan; Seyed Vahid Mirnezami; Baskar Ganapathysubramanian; Patrick S. Schnable; Timothy A. Gonsalves (ICVGIP, 2018)

Field-based robotic phenotyping of sorghum plant architecture using stereo vision. - Yin Bao; Lie Tang; Matthew W. Breitzman; Maria G. Salas Fernandez; Patrick S. Schnable (J. Field Robotics, 2019)

Pheno-mapper: an interactive toolbox for the visual exploration of phenomics data. - Youjia Zhou; Methun Kamruzzaman; Patrick S. Schnable; Bala Krishnamoorthy; Ananth Kalyanaraman; Bei Wang 001 (BCB, 2021)

A Measurement Study of TVWS Wireless Channels in Crop Farms. - Matthias Sander Frigau; Tianyi Zhang 016; Chen-Ye Lim; Hongwei Zhang 001; Ahmed E. Kamal 001; Arun K. Somani; Stefan Hey; Patrick S. Schnable (MASS, 2021)

ARA: A Wireless Living Lab Vision for Smart and Connected Rural Communities. - Hongwei Zhang 001; Yong Guan; Ahmed E. Kamal 001; Daji Qiao; Mai Zheng; Anish Arora; Ozdal Boyraz; Brian Cox; Thomas Daniels 001; Matthew J. Darr; Doug Jacobson; Ashfaq Khokhar 001; et al. (WiNTECH, 2021)

Hyppo-X: A Scalable Exploratory Framework for Analyzing Complex Phenomics Data. - Methun Kamruzzaman; Ananth Kalyanaraman; Bala Krishnamoorthy; Stefan Hey; Patrick S. Schnable (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Ten simple rules to ruin a collaborative environment. - Carolyn J. Lawrence-Dill; Robyn L. Allscheid; Albert Boaitey; Todd Bauman; Edward S. Buckler IV; Jennifer L. Clarke; Christopher Cullis; Jack Dekkers; Cassandra J. Dorius; Shawn F. Dorius; David Ertl; Matthew Homann; et al. (PLoS Comput. Biol., 2022)

Field-based robotic leaf angle detection and characterization of maize plants using stereo vision and deep convolutional neural networks. - Lirong Xiang; Jingyao Gai; Yin Bao; Jianming Yu; Patrick S. Schnable; Lie Tang (J. Field Robotics, 2023)

3D reconstruction of plants using probabilistic voxel carving. - Jiale Feng; Mojdeh Saadati; Talukder Z. Jubery; Anushrut Jignasu; Aditya Balu; Yawei Li; Lakshmi Attigala; Patrick S. Schnable; Soumik Sarkar; Baskar Ganapathysubramanian; Adarsh Krishnamurthy (Comput. Electron. Agric., 2023)

AIIRA: AI Institute for Resilient Agriculture. - Baskar Ganapathysubramanian; Jessica M. P. Bell; George Kantor; Nirav C. Merchant; Soumik Sarkar; Patrick S. Schnable; Michelle Segovia; Arti Singh; Asheesh K. Singh (AI Mag., 2024)

Procedural generation of 3D maize plant architecture from LiDAR data. - Mozhgan Hadadi; Mehdi Saraeian; Jackson Godbersen; Talukder Z. Jubery; Yawei Li; Lakshmi Attigala; Aditya Balu; Soumik Sarkar; Patrick S. Schnable; Adarsh Krishnamurthy; Baskar Ganapathysubramanian (Comput. Electron. Agric., 2025)

MaizeEar-SAM: Zero-Shot Maize Ear Phenotyping. - Hossein Zaremehrjerdi; Lisa Coffey; Talukder Z. Jubery; Huyu Liu; Jon Turkus; Kyle Linders; James C. Schnable; Patrick S. Schnable; Baskar Ganapathysubramanian (CoRR, 2025)

Accessing the Effect of Phyllotaxy and Planting Density on Light Use Efficiency in Field-Grown Maize using 3D Reconstructions. - Nasla Saleem; Talukder Zaki Jubery; Aditya Balu; Yan Zhou; Yawei Li; Patrick S. Schnable; Adarsh Krishnamurthy; Baskar Ganapathysubramanian (CoRR, 2025)

AgriField3D: A Curated 3D Point Cloud and Procedural Model Dataset of Field-Grown Maize from a Diversity Panel. - Elvis Kimara; Mozhgan Hadadi; Jackson Godbersen; Aditya Balu; Talukder Z. Jubery; Yawei Li; Adarsh Krishnamurthy; Patrick S. Schnable; Baskar Ganapathysubramanian (CoRR, 2025)