A Systematic Computational Approach for Transcription Factor Target Gene Prediction. - Ji He; Xinbin Dai; Xuechun Zhao (CIBCB, 2006)

Associative Artificial Neural Network for Discovery of Highly Correlated Gene Groups Based on Gene Ontology and Gene Expression. - Ji He; Xinbin Dai; Xuechun Zhao (CIBCB, 2007)

PLAN: a web platform for automating high-throughput BLAST searches and for managing and mining results. - Ji He; Xinbin Dai; Xuechun Zhao (BMC Bioinform., 2007)

A nearest neighbor approach for automated transporter prediction and categorization from protein sequences. - Haiquan Li; Xinbin Dai; Xuechun Zhao (Bioinform., 2008)

pssRNAMiner: a plant short small RNA regulatory cascade analysis server. - Xinbin Dai; Patrick Xuechun Zhao (Nucleic Acids Res., 2008)

A Method Based on Genetic Algorithm for Anti-ship Missile Path Planning. - Xuechun Zhao; Xiaohong Fan (CSO (2), 2009)

The Medicago truncatula gene expression atlas web server. - Ji He; Vagner A. Benedito; Mingyi Wang; Jeremy D. Murray; Patrick Xuechun Zhao; Yuhong Tang; Michael K. Udvardi (BMC Bioinform., 2009)

TransportTP: A two-phase classification approach for membrane transporter prediction and characterization. - Haiquan Li; Vagner A. Benedito; Michael K. Udvardi; Patrick Xuechun Zhao (BMC Bioinform., 2009)

Discovery of Protein Interaction Sites. - Haiquan Li; Jinyan Li 001; Xuechun Zhao (Encyclopedia of Data Warehousing and Mining, 2009)

Computational analysis of miRNA targets in plants: current status and challenges. - Xinbin Dai; Zhaohong Zhuang; Patrick Xuechun Zhao (Briefings Bioinform., 2011)

psRNATarget: a plant small RNA target analysis server. - Xinbin Dai; Patrick Xuechun Zhao (Nucleic Acids Res., 2011)

LegumeIP: an integrative database for comparative genomics and transcriptomics of model legumes. - Jun Li; Xinbin Dai; Tingsong Liu; Patrick Xuechun Zhao (Nucleic Acids Res., 2012)

PlantTFcat: an online plant transcription factor and transcriptional regulator categorization and analysis tool. - Xinbin Dai; Senjuti Sinharoy; Michael K. Udvardi; Patrick Xuechun Zhao (BMC Bioinform., 2013)

Quality evaluation of extracted ion chromatograms and chromatographic peaks in liquid chromatography/mass spectrometry-based metabolomics data. - Wenchao Zhang; Patrick Xuechun Zhao (BMC Bioinform., 2014)

LegumeIP 2.0 - a platform for the study of gene function and genome evolution in legumes. - Jun Li; Xinbin Dai; Zhaohong Zhuang; Patrick Xuechun Zhao (Nucleic Acids Res., 2016)

PEPIS: A Pipeline for Estimating Epistatic Effects in Quantitative Trait Locus Mapping and Genome-Wide Association Studies. - Wenchao Zhang; Xinbin Dai; Qishan Wang 001; Shizhong Xu; Patrick Xuechun Zhao (PLoS Comput. Biol., 2016)

JRmGRN: joint reconstruction of multiple gene regulatory networks with common hub genes using data from multiple tissues or conditions. - Wenping Deng; Kui Zhang; Sanzhen Liu; Patrick X. Zhao; Shizhong Xu; Hairong Wei (Bioinform., 2018)

psRNATarget: a plant small RNA target analysis server (2017 release). - Xinbin Dai; Zhaohong Zhuang; Patrick Xuechun Zhao (Nucleic Acids Res., 2018)

GWASpro: a high-performance genome-wide association analysis server. - Bongsong Kim; Xinbin Dai; Wenchao Zhang; Zhaohong Zhuang; Darlene L. Sanchez; Thomas Lübberstedt; Yun Kang; Michael K. Udvardi; William D. Beavis; Shizhong Xu; Patrick X. Zhao (Bioinform., 2019)

LegumeIP V3: from models to crops - an integrative gene discovery platform for translational genomics in legumes. - Xinbin Dai; Zhaohong Zhuang; Clarissa Boschiero; Yibo Dong 003; Patrick X. Zhao (Nucleic Acids Res., 2021)

Mutagenesis screen to map the functionals of parameters of Large Language Models. - Yue Hu; Kai Hu; Patrick X. Zhao; Javed Khan; Chengming Xu 004 (CoRR, 2024)

The Spatially Seamless Spatiotemporal Fusion Model Based on Generative Adversarial Networks. - Chenyang Weng; Yulin Zhan; Xingfa Gu; Jian Yang; Yan Liu 080; Hong Guo; Zilong Lian; Shiyuan Zhang; Zhangjie Wang; Xuechun Zhao (IEEE J. Sel. Top. Appl. Earth Obs. Remote. Sens., 2024)