Context Preserving Crossover in Genetic Programming. - Patrik D'haeseleer (International Conference on Evolutionary Computation, 1994)

An Immunological Approach to Change Detection: Theoretical Results. - Patrik D'haeseleer (CSFW, 1996)

An Immunological Approach to Change Detection: Algorithms, Analysis and Implications. - Patrik D'haeseleer; Stephanie Forrest; Paul Helman (S&P, 1996)

Linear Modeling of mRNA Expression Levels During CNS Development and Injury. - Patrik D'haeseleer; X. Wen; Stefanie Fuhrman; Roland Somogyi (Pacific Symposium on Biocomputing, 1999)

Genetic network inference: from co-expression clustering to reverse engineering. - Patrik D'haeseleer; Shoudan Liang; Roland Somogyi (Bioinform., 2000)

Automated modelling of signal transduction networks. - Martin Steffen; Allegra Petti; John Aach; Patrik D'haeseleer; George M. Church (BMC Bioinform., 2002)

Estimating and Improving Protein Interaction Error Rates. - Patrik D'haeseleer; George M. Church (CSB, 2004)

Microbial genotype-phenotype mapping by class association rule mining. - Makio Tamura; Patrik D'haeseleer (Bioinform., 2008)

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes. - Samuel M. D. Seaver; Filipe Liu; Qizhi Zhang; James G. Jeffryes; José P. Faria; Janaka N. Edirisinghe; Michael B. Mundy; Nicholas Chia; Elad Noor; Moritz Emanuel Beber; Aaron A. Best; Matthew DeJongh; et al. (Nucleic Acids Res., 2021)

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes (Corrigendum). - Samuel M. D. Seaver; Filipe Liu; Qizhi Zhang; James G. Jeffryes; José P. Faria; Janaka N. Edirisinghe; Michael B. Mundy; Nicholas Chia; Elad Noor; Moritz Emanuel Beber; Aaron A. Best; Matthew DeJongh; et al. (Nucleic Acids Res., 2021)