Domain Fishing: a first step in protein comparative modelling. - Bruno Contreras-Moreira; Paul A. Bates (Bioinform., 2002)

Probability-based model of protein-protein interactions on biological timescales. - Alexander L. Tournier; Paul W. Fitzjohn; Paul A. Bates (Algorithms Mol. Biol., 2006)

Global topological features of cancer proteins in the human interactome. - Pall F. Jonsson; Paul A. Bates (Bioinform., 2006)

Developing a move-set for protein model refinement. - Marc N. Offman; Paul W. Fitzjohn; Paul A. Bates (Bioinform., 2006)

Cluster analysis of networks generated through homology: automatic identification of important protein communities involved in cancer metastasis. - Pall F. Jonsson; Tamara Cavanna; Daniel Zicha; Paul A. Bates (BMC Bioinform., 2006)

Can MM-PBSA calculations predict the specificities of protein kinase inhibitors? - Christopher S. Page; Paul A. Bates (J. Comput. Chem., 2006)

Artificial life as cancer research - embodied agent modelling of blood vessel growth in tumours. - Katie Bentley; Paul A. Bates; Holger Gerhardt (ALIFE, 2008)

Tipping the Balance: Robustness of Tip Cell Selection, Migration and Fusion in Angiogenesis. - Katie Bentley; Giovanni Mariggi; Holger Gerhardt; Paul A. Bates (PLoS Comput. Biol., 2009)

Bridging the gaps: atomic simulation of macromolecular environment brings together protein docking, interaction kinetics and the crowding effects. - Xiaofan F. Li; Iain H. Moal; Paul A. Bates (BMC Bioinform., 2010)

Protein-protein binding affinity prediction on a diverse set of structures. - Iain H. Moal; Rudi Agius; Paul A. Bates (Bioinform., 2011)

A Structural Systems Biology Approach for Quantifying the Systemic Consequences of Missense Mutations in Proteins. - Tammy M. K. Cheng; Lucas Goehring; Linda Jeffery; Yu-En Lu; Jacqueline Hayles; Béla Novák; Paul A. Bates (PLoS Comput. Biol., 2012)

Kinetic Rate Constant Prediction Supports the Conformational Selection Mechanism of Protein Binding. - Iain H. Moal; Paul A. Bates (PLoS Comput. Biol., 2012)

SwarmDock: a server for flexible protein-protein docking. - Mieczyslaw Torchala; Iain H. Moal; Raphael A. G. Chaleil; Juan Fernández-Recio; Paul A. Bates (Bioinform., 2013)

The scoring of poses in protein-protein docking: current capabilities and future directions. - Iain H. Moal; Mieczyslaw Torchala; Paul A. Bates; Juan Fernández-Recio (BMC Bioinform., 2013)

RaTrav: a tool for calculating mean first-passage times on biochemical networks. - Mieczyslaw Torchala; Przemyslaw Chelminiak; Michal Kurzynski; Paul A. Bates (BMC Syst. Biol., 2013)

Characterizing Changes in the Rate of Protein-Protein Dissociation upon Interface Mutation Using Hotspot Energy and Organization. - Rudi Agius; Mieczyslaw Torchala; Iain H. Moal; Juan Fernández-Recio; Paul A. Bates (PLoS Comput. Biol., 2013)

Optimisation of a Molecular Dynamics Simulation of Chromosome Condensation. - Timothy R. Law; Jonny Hancox; Tammy M. K. Cheng; Raphael A. G. Chaleil; Steven A. Wright 001; Paul A. Bates; Stephen A. Jarvis (SBAC-PAD, 2016)

IRaPPA: information retrieval based integration of biophysical models for protein assembly selection. - Iain H. Moal; Didier Barradas-Bautista; Brian Jiménez-García; Mieczyslaw Torchala; Arjan van der Velde; Thom Vreven; Zhiping Weng; Paul A. Bates; Juan Fernández-Recio (Bioinform., 2017)

Development of a Deep Learning Method to Predict Optimal Ablation Patterns for Atrial Fibrillation. - Marica Muffoletto; Xiao Fu; Aditi Roy; Marta Varela; Paul A. Bates; Oleg V. Aslanidi (CIBCB, 2019)

Matrix feedback enables diverse higher-order patterning of the extracellular matrix. - Esther Wershof; Danielle Park; Robert P. Jenkins; David J. Barry; Erik Sahai; Paul A. Bates (PLoS Comput. Biol., 2019)