Docking Conformationally Flexible Small Molecules into a Protein Binding Site through Evolutionary Programming. - Daniel K. Gehlhaar; Gennady Verkhivker; Paul A. Rejto; David B. Fogel; Lawrence J. Fogel; Stephan T. Freer (Evolutionary Programming, 1995)

Fully Automated and Rapic Flexible Docking of Inhibitors Covalently Bound to Serine Proteases. - Daniel K. Gehlhaar; Djamal Bouzida; Paul A. Rejto (Evolutionary Programming, 1998)

Thermodynamics and Kinetics of Ligand-Protein Binding Studied with the Weighted Histogram Analysis Method and Simulated Annealing. - Djamal Bouzida; Sandra Arthurs; Anthony B. Colson; Stephan T. Freer; Daniel K. Gehlhaar; Veda Larson; Brock A. Luty; Paul A. Rejto; Peter W. Rose; Gennady Verkhivker (Pacific Symposium on Biocomputing, 1999)

Deciphering common failures in molecular docking of ligand-protein complexes. - Gennady Verkhivker; Djamal Bouzida; Daniel K. Gehlhaar; Paul A. Rejto; Sandra Arthurs; Anthony B. Colson; Stephan T. Freer; Veda Larson; Brock A. Luty; Tami Marrone; Peter W. Rose (J. Comput. Aided Mol. Des., 2000)

Statistical method on nonrandom clustering with application to somatic mutations in cancer. - Jingjing Ye; Adam Pavlícek; Elizabeth A. Lunney; Paul A. Rejto; Chi-Hse Teng (BMC Bioinform., 2010)

Knowledge discovery and data mining in pharmaceutical cancer research. - Paul A. Rejto (KDD, 2011)

Cell Index Database (CELLX): A Web Tool for Cancer Precision Medicine. - Keith A. Ching; Kai Wang 045; Zhengyan Kan; Julio Fernández; Wenyan Zhong; Jarek Kostrowicki; Tao Xie 002; Zhou Zhu; Jean-François Martin; Maria Koehler; Kim Arndt; Paul A. Rejto (Pacific Symposium on Biocomputing, 2015)

TNER: a novel background error suppression method for mutation detection in circulating tumor DNA. - Shibing Deng; Maruja Lira; Donghui Huang; Kai Wang 045; Crystal Valdez; Jennifer Kinong; Paul A. Rejto; Jadwiga R. Bienkowska; James Hardwick; Tao Xie 002 (BMC Bioinform., 2018)

Detecting somatic mutations with high accuracy in plasma cell-free DNA with TNER2. - Shibing Deng; Joy Hsu; Jadwiga R. Bienkowska; Paul A. Rejto; Tao Xie 002 (BIBM, 2019)