Statistical Use of Argonaute Expression and RISC Assembly in microRNA Target Identification. - Stephen A. Stanhope; Srikumar Sengupta; Johan den Boon; Paul Ahlquist; Michael A. Newton (PLoS Comput. Biol., 2009)

Limited Agreement of Independent RNAi Screens for Virus-Required Host Genes Owes More to False-Negative than False-Positive Factors. - Linhui Hao; Qiuling He; Zhishi Wang; Mark Craven; Michael A. Newton; Paul Ahlquist (PLoS Comput. Biol., 2013)

Inferring Host Gene Subnetworks Involved in Viral Replication. - Deborah Chasman; Brandi Gancarz; Linhui Hao; Michael Ferris 001; Paul Ahlquist; Mark Craven (PLoS Comput. Biol., 2014)

Augmenting subnetwork inference with information extracted from the scientific literature. - Sid Kiblawi; Deborah Chasman; Amanda Henning; Eunju Park; Hoifung Poon; Michael Gould; Paul Ahlquist; Mark Craven (PLoS Comput. Biol., 2019)