A Model for Indexing Medical Documents Combining Statistical and Symbolic Knowledge. - Paul Avillach; Michel Joubert; Marius Fieschi (AMIA, 2007)

Proposal of a French Health Identification Number Interoperable at the European Level. - Catherine Quantin; François-André Allaert; Paul Avillach; Benoît Riandey; Marius Fieschi; Maniane Fassa; Olivier Cohen (MedInfo, 2007)

Using Knowledge for Indexing Health Web Resources in a Quality-Controlled Gateway. - Michel Joubert; Stéfan Jacques Darmoni; Paul Avillach; Badisse Dahamna; Marius Fieschi (MIE, 2008)

A Semantic Approach for the Homogeneous Identification of Events in Eight Patient Databases: A Contribution to the European eu-ADR Project. - Paul Avillach; Fleur Mougin; Michel Joubert; Frantz Thiessard; Antoine Pariente; Jean-Charles Dufour; Gianluca Trifirò; Giovanni Polimeni; Maria Antonietta Catania; Carlo Giaquinto; Giampiero Mazzaglia; Gianluca Baio; et al. (MIE, 2009)

Design and evaluation of a semantic approach for the homogeneous identification of events in eight patient databases: a contribution to the European EU-ADR project. - Paul Avillach; Michel Joubert; Frantz Thiessard; Gianluca Trifirò; Jean-Charles Dufour; Antoine Pariente; Fleur Mougin; Giovanni Polimeni; Maria Antonietta Catania; Carlo Giaquinto; Giampiero Mazzaglia; Carla Fornari; et al. (MedInfo, 2010)

Using Literature-based Discovery to Explain Drug Adverse Effects. - Dimitar Hristovski; Anita Burgun; Paul Avillach; Thomas C. Rindflesch (AMIA, 2012)

Automatic Filtering and Substantiation of Drug Safety Signals. - Anna Bauer-Mehren; Erik M. van Mulligen; Paul Avillach; María del Carmen Carrascosa; Ricard García-Serna; Janet Piñero González; Bharat Singh; Pedro Lopes 002; José Luís Oliveira; Gayo Diallo; Ernst Ahlberg Helgee; Scott Boyer; et al. (PLoS Comput. Biol., 2012)

Preliminary Evaluation of a Literature-based Discovery Method for Explaining Drug Adverse Effects. - Dimitar Hristovski; Anita Burgun-Parenthoine; Paul Avillach; Thomas C. Rindflesch (AMIA, 2013)

Harmonization process for the identification of medical events in eight European healthcare databases: the experience from the EU-ADR project. - Paul Avillach; Preciosa M. Coloma; Rosa Gini; Martijn J. Schuemie; Fleur Mougin; Jean-Charles Dufour; Giampiero Mazzaglia; Carlo Giaquinto; Carla Fornari; Ron Herings; Mariam Molokhia; Lars Pedersen; et al. (J. Am. Medical Informatics Assoc., 2013)

Design and validation of an automated method to detect known adverse drug reactions in MEDLINE: a contribution from the EU-ADR project. - Paul Avillach; Jean-Charles Dufour; Gayo Diallo; Francesco Salvo; Michel Joubert; Frantz Thiessard; Fleur Mougin; Gianluca Trifirò; Annie Fourrier-Réglat; Antoine Pariente; Marius Fieschi (J. Am. Medical Informatics Assoc., 2013)

Phenome-Wide Association Studies on a Quantitative Trait: Application to TPMT Enzyme Activity and Thiopurine Therapy in Pharmacogenomics. - Antoine Neuraz; Laurent Chouchana; Georgia Malamut; Christine Le Beller; Denis Roche; Philippe Beaune; Patrice Degoulet; Anita Burgun; Marie-Anne Loriot; Paul Avillach (PLoS Comput. Biol., 2013)

Handling Clinical and Next Generation Sequencing data: new strategies in i2b2 and tranSMART. - Shawn N. Murphy; Riccardo Bellazzi; Matteo Gabetta; Paul Avillach; Lori C. Phillips (AMIA, 2014)

Translational research platforms integrating clinical and omics data: a review of publicly available solutions. - Vincent Canuel; Bastien Rance; Paul Avillach; Patrice Degoulet; Anita Burgun (Briefings Bioinform., 2015)

An informatics research agenda to support precision medicine: seven key areas. - Jessica D. Tenenbaum; Paul Avillach; Marge M. Benham-Hutchins; Matthew K. Breitenstein; Erin L. Crowgey; Mark A. Hoffman; Xia Jiang; Subha Madhavan; John E. Mattison; Radhakrishnan Nagarajan; Bisakha Ray; Dmitriy Shin; et al. (J. Am. Medical Informatics Assoc., 2016)

Count Everything: Secure Count Query Framework Across Big Data Centers. - Xiaoqian Jiang; Claudiu Farcas; Benedict Paten; Mark Diekhans; Paul Avillach; Wallace Wadge; David Haussler; Lucila Ohno-Machado; Ida Sim (CRI, 2017)

smartAPI: Towards a More Intelligent Network of Web APIs. - Amrapali Zaveri; Shima Dastgheib; Chunlei Wu; Trish Whetzel; Ruben Verborgh; Paul Avillach; Gabor Korodi; Raymond Terryn; Kathleen M. Jagodnik; Pedro Assis; Michel Dumontier (ESWC (2), 2017)

The SmartAPI Ecosystem for Making Web APIs FAIR. - Shima Dastgheib; Trish Whetzel; Amrapali Zaveri; Cyrus Afrasiabi; Pedro Assis; Paul Avillach; Kathleen M. Jagodnik; Gabor Korodi; Marcin Pilarczyk; Jeff de Pons; Stephan C. Schürer; Raymond Terryn; et al. (ISWC (Posters, Demos & Industry Tracks), 2017)

The Georges Pompidou University Hospital Clinical Data Warehouse: A 8-years follow-up experience. - Anne-Sophie Jannot; Eric Zapletal; Paul Avillach; Marie-France Mamzer; Anita Burgun; Patrice Degoulet (Int. J. Medical Informatics, 2017)

ADEPT: An End-to-End System for High-Throughput Pharmacovigilance. - Alon Geva; Jason P. Stedman; Guergana Savova; Chen Lin 002; Shannon F. Manzi; Paul Avillach; Kenneth D. Mandl (AMIA, 2018)

Rcupcake: an R package for querying and analyzing biomedical data through the BD2K PIC-SURE RESTful API. - Alba Gutiérrez-Sacristán; Romain Guedj; Gabor Korodi; Jason Stedman; Laura Inés Furlong; Chirag J. Patel; Isaac S. Kohane; Paul Avillach (Bioinform., 2018)

Screening pregnant women for suicidal behavior in electronic medical records: diagnostic codes vs. clinical notes processed by natural language processing. - Qiu-Yue Zhong; Elizabeth W. Karlson; Bizu Gelaye; Sean Finan; Paul Avillach; Jordan W. Smoller; Tianxi Cai; Michelle A. Williams (BMC Medical Informatics Decis. Mak., 2018)

A Semi-Automated Approach for Multilingual Terminology Matching: Mapping the French Version of the ICD-10 to the ICD-10 CM. - Emmanuelle Sylvestre; Guillaume Bouzillé; Michael McDuffie; Emmanuel Chazard; Paul Avillach; Marc Cuggia (MIE, 2020)

dbgap2x: an R package to explore and extract data from the database of Genotypes and Phenotypes (dbGaP). - Grégoire Versmée; Laura Versmée; Mikaël Dusenne; Niloofar Jalali; Paul Avillach (Bioinform., 2020)

Scalability and cost-effectiveness analysis of whole genome-wide association studies on Google Cloud Platform and Amazon Web Services. - Inès Krissaane; Carlos De Niz; Alba Gutiérrez-Sacristán; Gabor Korodi; Nneka Ede; Ranjay Kumar; Jessica Lyons; Arjun K. Manrai; Chirag J. Patel; Isaac S. Kohane; Paul Avillach (J. Am. Medical Informatics Assoc., 2020)

International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium. - Gabriel A. Brat; Griffin M. Weber; Nils Gehlenborg; Paul Avillach; Nathan P. Palmer; Luca Chiovato; James J. Cimino; Lemuel R. Waitman; Gilbert S. Omenn; Alberto Malovini; Jason H. Moore; Brett K. Beaulieu-Jones; et al. (npj Digit. Medicine, 2020)

GenoPheno: cataloging large-scale phenotypic and next-generation sequencing data within human datasets. - Alba Gutiérrez-Sacristán; Carlos De Niz; Cartik Kothari; Sek Won Kong; Kenneth D. Mandl; Paul Avillach (Briefings Bioinform., 2021)

A high-throughput phenotyping algorithm is portable from adult to pediatric populations. - Alon Geva; Molei Liu; Vidul Ayakulangara Panickan; Paul Avillach; Tianxi Cai; Kenneth D. Mandl (J. Am. Medical Informatics Assoc., 2021)

Validation of an internationally derived patient severity phenotype to support COVID-19 analytics from electronic health record data. - Jeffrey G. Klann; Hossein Estiri; Griffin M. Weber; Bertrand Moal; Paul Avillach; Chuan Hong; Amelia L. M. Tan; Brett K. Beaulieu-Jones; Victor M. Castro; Thomas Maulhardt; Alon Geva; Alberto Malovini; et al. (J. Am. Medical Informatics Assoc., 2021)

Finding commonalities in rare diseases through the undiagnosed diseases network. - Josephine Yates; Alba Gutiérrez-Sacristán; Vianney Jouhet; Kimberly Leblanc; Cecilia Esteves; Thomas N. Desain; Nick Benik; Jason Stedman; Nathan P. Palmer; Guillaume Mellon; Isaac S. Kohane; Paul Avillach (J. Am. Medical Informatics Assoc., 2021)

Multi-PheWAS intersection approach to identify sex differences across comorbidities in 59 140 pediatric patients with autism spectrum disorder. - Alba Gutiérrez-Sacristán; Carlos Sáez; Carlos De Niz; Niloofar Jalali; Thomas N. Desain; Ranjay Kumar; Joany M. Zachariasse; Kathe P. Fox; Nathan P. Palmer; Isaac S. Kohane; Paul Avillach (J. Am. Medical Informatics Assoc., 2022)

SurvMaximin: Robust federated approach to transporting survival risk prediction models. - Xuan Wang; Harrison G. Zhang; Xin Xiong; Chuan Hong; Griffin M. Weber; Gabriel A. Brat; Clara-Lea Bonzel; Yuan Luo 001; Rui Duan 004; Nathan P. Palmer; Meghan R. Hutch; Alba Gutiérrez-Sacristán; et al. (J. Biomed. Informatics, 2022)

Multiview Incomplete Knowledge Graph Integration with application to cross-institutional EHR data harmonization. - Doudou Zhou; Ziming Gan; Xu Shi; Alina Patwari; Everett Neil Rush; Clara-Lea Bonzel; Vidul Ayakulangara Panickan; Chuan Hong; Yuk-Lam Ho; Tianrun Cai; Lauren Costa; Xiaoou Li; et al. (J. Biomed. Informatics, 2022)

International electronic health record-derived post-acute sequelae profiles of COVID-19 patients. - Harrison G. Zhang; Arianna Dagliati; Zahra Shakeri Hossein Abad; Xin Xiong; Clara-Lea Bonzel; Zongqi Xia; Bryce W. Q. Tan; Paul Avillach; Gabriel A. Brat; Chuan Hong; Michele Morris; Shyam Visweswaran; et al. (npj Digit. Medicine, 2022)

Informative missingness: What can we learn from patterns in missing laboratory data in the electronic health record? - Amelia L. M. Tan; Emily J. Getzen; Meghan R. Hutch; Zachary H. Strasser; Alba Gutiérrez-Sacristán; Trang T. Le; Arianna Dagliati; Michele Morris; David A. Hanauer; Bertrand Moal; Clara-Lea Bonzel; William Yuan; et al. (J. Biomed. Informatics, 2023)

Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research. - Stan Ahalt; Paul Avillach; Rebecca R. Boyles; Kira Bradford; Steven Cox 001; Brandi Davis-Dusenbery; Robert L. Grossman; Ashok K. Krishnamurthy 001; Alisa Manning; Benedict Paten; Anthony Philippakis; Ingrid Borecki; et al. (J. Am. Medical Informatics Assoc., 2023)