Chester: A Web Delivered Locally Computed Chest X-Ray Disease Prediction System. - Joseph Paul Cohen; Paul Bertin; Vincent Frappier (CoRR, 2019)

Analysis of Gene Interaction Graphs for Biasing Machine Learning Models. - Paul Bertin; Mohammad Hashir; Martin Weiss; Geneviève Boucher; Vincent Frappier; Joseph Paul Cohen (CoRR, 2019)

Is graph biased feature selection of genes better than random? - Mohammad Hashir; Paul Bertin; Martin Weiss; Vincent Frappier; Theodore Perkins; Geneviève Boucher; Joseph Paul Cohen (CoRR, 2019)

TorchXRayVision: A library of chest X-ray datasets and models. - Joseph Paul Cohen; Joseph D. Viviano; Paul Bertin; Paul Morrison; Parsa Torabian; Matteo Guarrera; Matthew P. Lungren; Akshay Chaudhari; Rupert Brooks; Mohammad Hashir; Hadrien Bertrand (MIDL, 2022)

RECOVER: sequential model optimization platform for combination drug repurposing identifies novel synergistic compounds in vitro. - Paul Bertin; Jarrid Rector-Brooks; Deepak Sharma; Thomas Gaudelet; Andrew Anighoro; Torsten Gross; Francisco Martinez-Pena; Eileen L. Tang; Suraj M. S; Cristian Regep; Jeremy B. R. Hayter; Maksym Korablyov; et al. (CoRR, 2022)

Causal machine learning for single-cell genomics. - Alejandro Tejada-Lapuerta; Paul Bertin; Stefan Bauer; Hananeh Aliee; Yoshua Bengio; Fabian J. Theis (CoRR, 2023)

DEUP: Direct Epistemic Uncertainty Prediction. - Salem Lahlou; Moksh Jain; Hadi Nekoei; Victor Butoi; Paul Bertin; Jarrid Rector-Brooks; Maksym Korablyov; Yoshua Bengio (Trans. Mach. Learn. Res., 2023)

A scalable gene network model of regulatory dynamics in single cells. - Paul Bertin; Joseph D. Viviano; Alejandro Tejada-Lapuerta; Weixu Wang; Stefan Bauer; Fabian J. Theis; Yoshua Bengio (CoRR, 2025)