iRefScape. A Cytoscape plug-in for visualization and data mining of protein interaction data from iRefIndex. - Sabry Razick; Antonio Mora; Katerina Michalickova; Paul Boddie; Ian M. Donaldson (BMC Bioinform., 2011)

BiasAway: command-line and web server to generate nucleotide composition-matched DNA background sequences. - Aziz Khan 001; Rafael Riudavets Puig; Paul Boddie; Anthony Mathelier (Bioinform., 2021)

JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles. - Jaime Abraham Castro-Mondragón; Rafael Riudavets Puig; Ieva Rauluseviciute; Roza Berhanu lemma; Laura Turchi; Romain Blanc-Mathieu; Jeremy Lucas; Paul Boddie; Aziz Khan 001; Nicolás Manosalva Pérez; Oriol Fornes; Tiffany Y. Leung; et al. (Nucleic Acids Res., 2022)