Importing statistical measures into Artemis enhances gene identification in the Leishmania genome project. - Gautam Aggarwal; E. A. Worthey; Paul D. McDonagh; Peter J. Myler (BMC Bioinform., 2003)

Causal Modeling Using Network Ensemble Simulations of Genetic and Gene Expression Data Predicts Genes Involved in Rheumatoid Arthritis. - Heming Xing; Paul D. McDonagh; Jadwiga R. Bienkowska; Tanya Cashorali; Karl Runge; Robert E. Miller; Dave DeCaprio; Bruce Church; Ronenn Roubenoff; Iya G. Khalil; John Carulli (PLoS Comput. Biol., 2011)