Calculating Biological Module Enrichment or Depletion and Visualizing Data on Large-scale Molecular Maps with ACSNMineR and RNaviCell Packages. - Paul Deveau; Emmanuel Barillot; Valentina Boeva; Andrei Yu. Zinovyev; Eric Bonnet (R J., 2016)

QuantumClone: clonal assessment of functional mutations in cancer based on a genotype-aware method for clonal reconstruction. - Paul Deveau; Leo Colmet Daage; Derek Oldridge; Virginie Bernard; Angela Bellini; Mathieu Chicard; Nathalie Clement; Eve Lapouble; Valerie Combaret; Anne Boland; Vincent Meyer; Jean-Francois Deleuze; et al. (Bioinform., 2018)