Tolerance-Free NeST Representations. - Ryan Hayward; Paul E. Kearney (CCCG, 1994)

Emergent Behaviour in a Multi-Agent Economic Situation. - Paul E. Kearney; Arvindra Sehmi; Robert M. Smith (ECAI, 1994)

Inferring Evolutionary Trees from Ordinal Data. - Paul E. Kearney; Ryan Hayward; Henk Meijer (SODA, 1997)

A Six-Point Condition for Ordinal Matrices. - Paul E. Kearney (J. Comput. Biol., 1997)

The relationship between a phylogeny and its ordinal assertions. - Paul E. Kearney (1997)

Orchestrating Quartets: Approximation and Data Correction. - Tao Jiang 001; Paul E. Kearney; Ming Li 001 (FOCS, 1998)

The ordinal quartet method. - Paul E. Kearney (RECOMB, 1998)

Tree Powers. - Paul E. Kearney; Derek G. Corneil (J. Algorithms, 1998)

Quartet Cleaning: Improved Algorithms and Simulations. - Vincent Berry; Tao Jiang 001; Paul E. Kearney; Ming Li 001; Todd Wareham (ESA, 1999)

Recovering Branches on the Tree of Life: An Approximation Algorithm. - Paul E. Kearney; Ming Li 001; John Tsang; Tao Jiang 001 (SODA, 1999)

Evolutionary Trees and Ordinal Assertions. - Paul E. Kearney; Ryan Hayward; Henk Meijer (Algorithmica, 1999)

Some open problems in computational molecular biology. - Tao Jiang 001; Paul E. Kearney; Ming Li 001 (SIGACT News, 1999)

Phylogenetic k-Root and Steiner k-Root. - Guo-Hui Lin; Tao Jiang 001; Paul E. Kearney (ISAAC, 2000)

A practical algorithm for recovering the best supported edges of an evolutionary tree (extended abstract). - Vincent Berry; David Bryant; Tao Jiang 001; Paul E. Kearney; Ming Li 001; Todd Wareham; Haoyong Zhang (SODA, 2000)

Computing the quartet distance between evolutionary trees. - David Bryant; John Tsang; Paul E. Kearney; Ming Li 001 (SODA, 2000)

Embodiment of Evolutionary Computation in General Agents. - Robert E. Smith 001; Claudio Bonacina; Paul E. Kearney; Walter Merlat (Evol. Comput., 2000)

A Polynomial Time Approximation Scheme for Inferring Evolutionary Trees from Quartet Topologies and Its Application. - Tao Jiang 001; Paul E. Kearney; Ming Li 001 (SIAM J. Comput., 2000)

Agent Oriented Analysis Using Message/UML. - Giovanni Caire; Wim Coulier; Francisco J. Garijo; Jorge J. Gómez-Sanz; Juan Pavón; Francisco Leal; Paulo Chainho; Paul E. Kearney; Jamie Stark; Richard Evans; Philippe Massonet (AOSE, 2001)

Phylogenetics in the Post-Genomic Era - Session Introduction. - Jennifer E. Steinbachs; Paul E. Kearney (Pacific Symposium on Biocomputing, 2001)

Picking fruit from the tree of life: comments on taxonomic sampling and quartet methods. - Jonathan H. Badger; Paul E. Kearney (SAC, 2001)

An information-based sequence distance and its application to whole mitochondrial genome phylogeny. - Ming Li 001; Jonathan H. Badger; Xin Chen; Sam Kwong; Paul E. Kearney; Haoyong Zhang (Bioinform., 2001)

NeST graphs. - Ryan B. Hayward; Paul E. Kearney; Andrew J. Malton (Discret. Appl. Math., 2002)

Methods for reconstructing the history of tandem repeats and their application to the human genome. - Deep Jaitly; Paul E. Kearney; Guo-Hui Lin; Bin Ma 002 (J. Comput. Syst. Sci., 2002)

Efficient Generation of Uniform Samples from Phylogenetic Trees. - Paul E. Kearney; J. Ian Munro; Derek Phillips (WABI, 2003)

Selecting the branches for an evolutionary tree.: A polynomial time approximation scheme. - Jonathan H. Badger; Paul E. Kearney; Ming Li 001; John Tsang; Tao Jiang 001 (J. Algorithms, 2004)

A Collapsing Method for the Efficient Recovery of Optimal Edges in Phylogenetic Trees. - Michael Hu; Paul E. Kearney; Jonathan H. Badger (Int. J. Artif. Intell. Tools, 2005)