BioconductorBuntu: a Linux distribution that implements a web-based DNA microarray analysis server. - Paul Geeleher; Dermot Morris; John P. Hinde; Aaron Golden (Bioinform., 2009)

Gene-set analysis is severely biased when applied to genome-wide methylation data. - Paul Geeleher; Lori Hartnett; Laurance J. Egan; Aaron Golden; Raja Affendi Raja Ali; Cathal Seoighe (Bioinform., 2013)

Seq-ing improved gene expression estimates from microarrays using machine learning. - Paul K. Korir; Paul Geeleher; Cathal Seoighe (BMC Bioinform., 2015)

Consistency in large pharmacogenomic studies. - Paul Geeleher; Eric R. Gamazon; Cathal Seoighe; Nancy J. Cox; Rong Stephanie Huang (Nat., 2016)

Long non-coding RNA transcriptome of uncharacterized samples can be accurately imputed using protein-coding genes. - Aritro Nath; Paul Geeleher; Rong Stephanie Huang (Briefings Bioinform., 2020)

Random-effects meta-analysis of effect sizes as a unified framework for gene set analysis. - Mohammad A. Makrooni; Donal O'Shea; Paul Geeleher; Cathal Seoighe (PLoS Comput. Biol., 2022)