3D-GNOME: an integrated web service for structural modeling of the 3D genome. - Przemyslaw Szalaj; Paul J. Michalski; Przemyslaw Wróblewski; Zhonghui Tang; Michal Kadlof; Giovanni Mazzocco; Yijun Ruan; Dariusz Plewczynski (Nucleic Acids Res., 2016)

Highlights from the 11th ISCB Student Council Symposium 2015: Dublin, Ireland. 10 July 2015. - Katie Wilkins; Mehedi Hassan; Margherita Francescatto; Jakob B. Jespersen; R. Gonzalo Parra; Bart Cuypers; Dan F. DeBlasio; Alexander Junge; Anupama Jigisha; Farzana Rahman; Griet Laenen; Sander Willems; et al. (BMC Bioinform., 2016)

mol2sphere: spherical decomposition of multi-domain molecules for visualization and coarse grained spatial modeling. - Joseph Masison; Paul J. Michalski; Leslie M. Loew; Adam D. Schuyler (Bioinform., 2018)