A Framework for Modelling Short, High-Dimensional Multivariate Time Series: Preliminary Results in Virus Gene Expression Data Analysis. - Paul Kellam; Xiaohui Liu 001; Nigel J. Martin 001; Christine A. Orengo; Stephen Swift; Allan Tucker (IDA, 2001)

VIDA: a virus database system for the organization of animal virus genome open reading frames. - M. Mar Albà; David A. Lee; Frances M. G. Pearl; Adrian J. Shepherd; Nigel J. Martin 001; Christine A. Orengo; Paul Kellam (Nucleic Acids Res., 2001)

PFDB: a generic protein family database integrating the CATH domain structure database with sequence based protein family resources. - Adrian J. Shepherd; Nigel J. Martin 001; Roger G. Johnson; Paul Kellam; Christine A. Orengo (Bioinform., 2002)

A framework for modelling virus gene expression data. - Paul Kellam; Xiaohui Liu 001; Nigel J. Martin 001; Christine A. Orengo; Stephen Swift; Allan Tucker (Intell. Data Anal., 2002)

Consensus Clustering and Functional Interpretation of Gene Expression Data. - Paul Kellam; Stephen Swift; Allan Tucker; Veronica Vinciotti; Nigel J. Martin 001; Christine A. Orengo; Xiaohui Liu 001 (Spanish Bioinformatics Conference, 2004)

The Novel Virus Genotyping Tool (STAR) and its Use in Subtyping Human Immunodeficiency Virus Type-1 and Hepatitis B Viruses. - Richard Myers; Catherine V. Gale; Caroline Clark; Julie Bennett; Richard S. Tedder; Ian G. Williams; Paul Kellam (Spanish Bioinformatics Conference, 2004)

A statistical model for HIV-1 sequence classification using the subtype analyser (STAR). - Richard E. Myers; Catherine V. Gale; A. Harrison; Yasu Takeuchi; Paul Kellam (Bioinform., 2005)

An experimental evaluation of a loop versus a reference design for two-channel microarrays. - Veronica Vinciotti; Raya Khanin; Davide D'Alimonte; Xiaohui Liu 001; N. Cattini; G. Hotchkiss; Giselda Bucca; O. de Jesus; J. Rasaiyaah; Colin P. Smith; Paul Kellam; Ernst Wit (Bioinform., 2005)

Pyramidic Clustering of Large-Scale Microarray Images. - Paul O'Neill; Karl Fraser; Zidong Wang 001; Paul Kellam; Joost N. Kok; Xiaohui Liu 001 (Comput. J., 2005)

Aggregating Homologous Protein Families in Evolutionary Reconstructions of Herpesviruses. - Boris G. Mirkin; Renata da Silva Camargo; Trevor I. Fenner; George Loizou; Paul Kellam (CIBCB, 2006)

Improved Robustness in Time Series Analysis of Gene Expression Data by Polynomial Model Based Clustering. - Michael Hirsch 003; Allan Tucker; Stephen Swift; Nigel J. Martin 001; Christine A. Orengo; Paul Kellam; Xiaohui Liu 001 (CompLife, 2006)

Noise Filtering and Microarray Image Reconstruction Via Chained Fouriers. - Karl Fraser; Zidong Wang 001; Yongmin Li 001; Paul Kellam; Xiaohui Liu 001 (IDA, 2007)

Gene3D: comprehensive structural and functional annotation of genomes. - Corin Yeats; Jonathan G. Lees; Adam James Reid; Paul Kellam; Nigel J. Martin 001; Xinhui Liu; Christine A. Orengo (Nucleic Acids Res., 2008)

Can graph-cutting improve microarray gene expression reconstructions? - Karl Fraser; Zidong Wang 001; Yongmin Li 001; Paul Kellam; Xiaohui Liu 001 (Pattern Recognit. Lett., 2008)

Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II. - John P. Archer; Greg Baillie; Simon J. Watson 002; Paul Kellam; Andrew Rambaut; David L. Robertson (BMC Bioinform., 2012)

IVA: accurate de novo assembly of RNA virus genomes. - Martin Hunt; Astrid Gall; Swee Hoe Ong; Jacqui Brener; Bridget Ferns; Philip J. R. Goulder; Eleni Nastouli; Jacqueline A. Keane; Paul Kellam; Thomas D. Otto (Bioinform., 2015)

Virus genomes reveal factors that spread and sustained the Ebola epidemic. - Gytis Dudas; Luiz Max Carvalho; Trevor Bedford; Andrew J. Tatem; Guy Baele; Nuno R. Faria; Daniel J. Park; Jason T. Ladner; Armando Arias; Danny Asogun; Filip Bielejec; Sarah L. Caddy; et al. (Nat., 2017)

HIV-phyloTSI: subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence data. - Tanya Golubchik; Lucie Abeler-Dörner; Matthew Hall; Chris Wymant; David G. Bonsall; George Macintyre-Cockett; Laura Thomson; Jared M. Baeten; Connie L. Celum; Ronald Galiwango; Barry Kosloff; Mohammed Limbada; et al. (BMC Bioinform., 2025)