Report on the Advances in Computer Chess 6 Conference. - Paul Lu (J. Int. Comput. Games Assoc., 1990)

The Enterprise Distributed Programming Model. - Duane Szafron; Jonathan Schaeffer 001; Pok Sze Wong; Enoch Chan; Paul Lu; Carol Smith (Programming Environments for Parallel Computing, 1992)

A World Championship Caliber Checkers Program. - Jonathan Schaeffer 001; Joseph C. Culberson; Norman Treloar; Brent Knight; Paul Lu; Duane Szafron (Artif. Intell., 1992)

Man versus Machine for the World Checkers Championship. - Jonathan Schaeffer 001; Norman Treloar; Paul Lu; Robert Lake (J. Int. Comput. Games Assoc., 1993)

On the Versatility of Parallel Sorting by Regular Sampling. - Xiaobo Li 001; Paul Lu; Jonathan Schaeffer 001; John Shillington; Pok Sze Wong; Hanmao Shi (Parallel Comput., 1993)

Marion Tinsley: An Obituary. - Jonathan Schaeffer 001; Martin Bryant; Robert Lake; Paul Lu; Norman Treloar (J. Int. Comput. Games Assoc., 1995)

CHINOOK: The World Man-Machine Checkers Champion. - Jonathan Schaeffer 001; Robert Lake; Paul Lu; Martin Bryant (AI Mag., 1996)

Implementing Optimized Distributed Data Sharing Using Scoped Behavior and a Class Library. - Paul Lu (COOTS, 1997)

Aurora: Scoped Behavior for Per-Context Optimized Distributed Data Sharing. - Paul Lu (IPPS, 1997)

Multi-dispatch in the Java Virtual Machine (poster session): design and implementation. - Christopher Dutchyn; Paul Lu; Duane Szafron; Steven Bromling; Wade Holst (OOPSLA Addendum, 2000)

Implementing scoped behavior for flexible distributed data sharing. - Paul Lu (IEEE Concurr., 2000)

Multi-Dispatch in the Java Virtual Machine: Design and Implementation. - Christopher Dutchyn; Paul Lu; Duane Szafron; Steven Bromling; Wade Holst (COOTS, 2001)

A Case Study of Improving Memory Locality in Polygonal Model Simplification: Metrics and Performance. - Victor Salamon; Paul Lu; Ben Watson 001; Dima Brodsky; Dave Gomboc (HiPC, 2001)

Fast Parallel Association Rule Mining without Candidacy Generation. - Osmar R. Zaïane; Mohammad El-Hajj; Paul Lu (ICDM, 2001)

On-Line Debugging and Performance Monitoring with Barriers. - Ernesto Novillo; Paul Lu (IPDPS, 2001)

Integrating Bulk-Data Transfer into the Aurora Distributed Shared Data System. - Paul Lu (J. Parallel Distributed Comput., 2001)

Memory-Efficient A* Heuristics for Multiple Sequence Alignment. - Matthew McNaughton; Paul Lu; Jonathan Schaeffer 001; Duane Szafron (AAAI/IAAI, 2002)

User-Level Remote Data Access in Overlay Metacomputers. - Jeff Siegel; Paul Lu (CLUSTER, 2002)

Practical Heterogeneous Placeholder Scheduling in Overlay Metacomputers: Early Experiences. - Christopher Pinchak; Paul Lu; Mark Goldenberg (JSSPP, 2002)

Building the Checkers 10-piece Endgame Databases. - Jonathan Schaeffer 001; Yngvi Björnsson; Neil Burch; Robert Lake; Paul Lu; Steve Sutphen (ACG, 2003)

A Case Study of Selected SPLASH-2 Applications and the SBT Debugging Tool. - Ernesto Novillo; Paul Lu (IPDPS, 2003)

TrellisDAG: A System for Structured DAG Scheduling. - Mark Goldenberg; Paul Lu; Jonathan Schaeffer 001 (JSSPP, 2003)

The Trellis Security Infrastructure: A Layered Approach to Overlay Metacomputers . - Morgan Kan; Danny Ngo; Mark Lee; Paul Lu; Nolan Bard; Michael Closson; Meng Ding; Mark Goldenberg; Nicholas Lamb; Yang Wang 006; Ron Senda; Edmund Sumbar (HPCS, 2004)

Trellis-SDP: A Simple Data-Parallel Programming Interface. - Meng Ding; Paul Lu (ICPP Workshops, 2004)

Trellis Driver: Distributing a Java Workflow across a Network of Workstations. - Nicholas Lamb; Paul Lu; Alona Fyshe (ICPP Workshops, 2004)

Predicting subcellular localization of proteins using machine-learned classifiers. - Zhiyong Lu; Duane Szafron; Russell Greiner; Paul Lu; David S. Wishart; Brett Poulin; John Anvik; Cam Macdonell; Roman Eisner (Bioinform., 2004)

Proteome Analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations. - Duane Szafron; Paul Lu; Russell Greiner; David S. Wishart; Brett Poulin; Roman Eisner; Zhiyong Lu; John Anvik; Cam Macdonell; Alona Fyshe; David Meeuwis (Nucleic Acids Res., 2004)

The Proteome Analyst Suite of Automated Function Prediction Tools. - Brett Poulin; Duane Szafron; Paul Lu; Russell Greiner; David S. Wishart; Roman Eisner; Alona Fyshe; Brandon Pearcy; Luca Pireddu (AAAI, 2005)

Improving Protein Function Prediction Using the Hierarchical Structure of the Gene Ontology. - Roman Eisner; Brett Poulin; Duane Szafron; Paul Lu; Russell Greiner (CIBCB, 2005)

Pathway Analyst–Automated Metabolic Pathway Prediction. - Luca Pireddu; Brett Poulin; Duane Szafron; Paul Lu; David S. Wishart (CIBCB, 2005)

Bridging Local and Wide Area Networks for Overlay Distributed File Systems. - Michael Closson; Paul Lu (WORLDS, 2005)

Solving Checkers. - Jonathan Schaeffer 001; Yngvi Björnsson; Neil Burch; Akihiro Kishimoto; Martin Müller 003; Robert Lake; Paul Lu; Steve Sutphen (IJCAI, 2005)

Using Dataflow Information to Improve Inter-Workflow Instance Concurrency. - Yang Wang 006; Paul Lu (PDCAT, 2005)

BASys: a web server for automated bacterial genome annotation. - Gary H. Van Domselaar; Paul Stothard; Savita Shrivastava; Joseph A. Cruz; Anchi Guo; Xiaoli Dong; Paul Lu; Duane Szafron; Russell Greiner; David S. Wishart (Nucleic Acids Res., 2005)

PA-GOSUB: a searchable database of model organism protein sequences with their predicted Gene Ontology molecular function and subcellular localization. - Paul Lu; Duane Szafron; Russell Greiner; David S. Wishart; Alona Fyshe; Brandon Pearcy; Brett Poulin; Roman Eisner; Danny Ngo; Nicholas Lamb (Nucleic Acids Res., 2005)

Visual Explanation of Evidence with Additive Classifiers. - Brett Poulin; Roman Eisner; Duane Szafron; Paul Lu; Russell Greiner; David S. Wishart; Alona Fyshe; Brandon Pearcy; Cam Macdonell; John Anvik (AAAI, 2006)

FastLSA: A Fast, Linear-Space, Parallel and Sequential Algorithm for Sequence Alignment. - Adrian Driga; Paul Lu; Jonathan Schaeffer 001; Duane Szafron; Kevin Charter; Ian Parsons (Algorithmica, 2006)

The Trellis security infrastructure for overlay metacomputers and bridged distributed file systems. - Paul Lu; Michael Closson; Cam Macdonell; Paul Nalos; Danny Ngo; Morgan Kan; Mark Lee (J. Parallel Distributed Comput., 2006)

The Path-A metabolic pathway prediction web server. - Luca Pireddu; Duane Szafron; Paul Lu; Russell Greiner (Nucleic Acids Res., 2006)

Design, Implementation, and Evaluation of Trellis-SDP for File-Level Data Parallelism. - Meng Ding; Paul Lu; Juefu Wang; Mauricio D. Sacchi (ICPP, 2007)

The need for diversity in HPC: HPC'08 keynote address. - Paul Lu (SpringSim, 2008)

Improving subcellular localization prediction using text classification and the gene ontology. - Alona Fyshe; Yifeng Liu 001; Duane Szafron; Russell Greiner; Paul Lu (Bioinform., 2008)

Predicting homologous signaling pathways using machine learning. - Babak Bostan; Russell Greiner; Duane Szafron; Paul Lu (Bioinform., 2009)

GeNMR: a web server for rapid NMR-based protein structure determination. - Mark V. Berjanskii; Peter Tang; Jack Liang; Joseph A. Cruz; Jianjun Zhou; You Zhou; Edward Bassett; Cam Macdonell; Paul Lu; Guohui Lin; David S. Wishart (Nucleic Acids Res., 2009)

Virtual Application Appliances in Practice: Basic Mechanisms and Overheads. - Erkan Unal; Paul Lu (HPCC, 2010)

PROSESS: a protein structure evaluation suite and server. - Mark V. Berjanskii; Yongjie Liang; Jianjun Zhou; Peter Tang; Paul Stothard; You Zhou; Joseph A. Cruz; Cam Macdonell; Guohui Lin; Paul Lu; David S. Wishart (Nucleic Acids Res., 2010)

Elastic Phoenix: Malleable MapReduce for Shared-Memory Systems. - Adam Wolfe Gordon; Paul Lu (NPC, 2011)

Dataflow detection and applications to workflow scheduling. - Yang Wang 006; Paul Lu (Concurr. Comput. Pract. Exp., 2011)

Structured Message Transport. - Shayan Pooya; Paul Lu; Mike H. MacGregor (IPCCC, 2012)

DDS: A deadlock detection-based scheduling algorithm for workflow computations in HPC systems with storage constraints. - Yang Wang 006; Paul Lu (Parallel Comput., 2013)

Maximizing Active Storage Resources with Deadlock Avoidance in Workflow-Based Computations. - Yang Wang 006; Paul Lu (IEEE Trans. Computers, 2013)

WaFS: A Workflow-Aware File System for Effective Storage Utilization in the Cloud. - Yang Wang 006; Paul Lu; Kenneth B. Kent (IEEE Trans. Computers, 2015)

Large transfers for data analytics on shared wide-area networks. - Hamidreza Anvari; Paul Lu (Conf. Computing Frontiers, 2016)

Mitigating Routing Inefficiencies to Cloud-Storage Providers: A Case Study. - Soham Sinha; Di Niu; Zhi Wang; Paul Lu (IPDPS Workshops, 2016)

The Impact of Large-Data Transfers in Shared Wide-Area Networks: An Empirical Study. - Hamidreza Anvari; Paul Lu (ICCS, 2017)

Machine-Learned Classifiers for Protocol Selection on a Shared Network. - Hamidreza Anvari; Jesse Huard; Paul Lu (MLN, 2018)

An Empirical Study of Rabin Fingerprinting Parameters. - Paul Lu; Owen Randall; Emma McDonald (IEEE BigData, 2019)

A Parallel Data Stream Layer for Large Data Workloads on WANs. - Nooshin Eghbal; Paul Lu (HPCC/DSS/SmartCity, 2020)

Learning Mixed Traffic Signatures in Shared Networks. - Hamidreza Anvari; Paul Lu (ICCS (1), 2020)

Active Probing for Improved Machine-Learned Recognition of Network Traffic. - Hamidreza Anvari; Paul Lu (MLN, 2020)

Low-Variance Latency Through Forward Error Correction on Wide-Area Networks. - Nooshin Eghbal; Paul Lu (LCN, 2021)

Machine-Learned Recognition of Network Traffic for Optimization through Protocol Selection. - Hamidreza Anvari; Paul Lu (Comput., 2021)

Priority-aware forward error correction for HTTP. - Nooshin Eghbal; Paul Lu (ANRW, 2022)

Predicting Deduplication Performance: An Analytical Model and Empirical Evaluation. - Owen Randall; Paul Lu (IEEE Big Data, 2022)

Consistency Fences for Partial Order Delivery to Reduce Latency. - Nooshin Eghbal; Paul Lu (ICCS (1), 2022)

Common Pitfalls with Data Deduplication Parameters and Metrics. - Luke Schultz; Owen Randall; Paul Lu (IEEE Big Data, 2024)

Replication: "Taking a long look at QUIC". - Naveenraj Muthuraj; Nooshin Eghbal; Paul Lu (IMC, 2024)

Poster: How much of the Web Cares about QUIC's Anti-ossification Features? - Naveenraj Muthuraj; Paul Lu (IMC, 2024)