Pathbase: a database of mutant mouse pathology. - Paul N. Schofield; Jonathan B. L. Bard; Catherine Booth; Jacques Boniver; Vincenzo Covelli; Philippe Delvenne; Michele Ellender; Wilhelm Engstrom; Wolfgang Goessner; Michael Gruenberger; Heinz Hoefler; John Hopewell; et al. (Nucleic Acids Res., 2004)

State Complexity of Additive Weighted Finite Automata. - Kai Salomaa; Paul N. Schofield (Int. J. Found. Comput. Sci., 2007)

Digital preservation - financial sustainability of biological data and material resources. - Christina Chandras; Tom Weaver; Michael Zouberakis; John M. Hancock; Paul N. Schofield; Vassilis Aidinis (BIBE, 2008)

CASIMIR: Coordination and Sustainability of International Mouse Informatics Resources. - John M. Hancock; Paul N. Schofield; Christina Chandras; Michael Zouberakis; Vassilis Aidinis; Damian Smedley; Nadia A. Rosenthal; Klaus Schughart (BIBE, 2008)

Towards dynamic database infrastructures for mouse genetics. - Morris A. Swertz; Damian Smedley; Katy Wolstencroft; Rudi Alberts; Michael Zouberakis; Vassilis Aidinis; Klaus Schughart; Paul N. Schofield; Ritsert C. Jansen (BIBE, 2008)

The Mouse Resource Browser (MRB) - A near-complete registry of mouse resources. - Michael Zouberakis; Christina Chandras; John M. Hancock; Paul N. Schofield; Vassilis Aidinis (BIBE, 2008)

Solutions for data integration in functional genomics: a critical assessment and case study. - Damian Smedley; Morris A. Swertz; Katy Wolstencroft; Glenn Proctor; Michael Zouberakis; Jonathan B. L. Bard; John M. Hancock; Paul N. Schofield (Briefings Bioinform., 2008)

Towards a Disease Ontology. - Paul N. Schofield; Björn Rozell; Georgios V. Gkoutos (Anatomy Ontologies for Bioinformatics, 2008)

Models for financial sustainability of biological databases and resources. - Christina Chandras; Thomas Weaver; Michael Zouberakis; Damian Smedley; Klaus Schughart; Nadia A. Rosenthal; John M. Hancock; George Kollias; Paul N. Schofield; Vassilis Aidinis (Database J. Biol. Databases Curation, 2009)

Finding and sharing: new approaches to registries of databases and services for the biomedical sciences. - Damian Smedley; Paul N. Schofield; Chao-Kung Chen; Vassilis Aidinis; Crysanthi Ainali; Jonathan B. L. Bard; Rudi Balling; Ewan Birney; Andrew Blake 003; Erik Bongcam-Rudloff; Anthony J. Brookes; Gianni Cesareni; et al. (Database J. Biol. Databases Curation, 2010)

Mouse Resource Browser - a database of mouse databases. - Michael Zouberakis; Christina Chandras; Morris A. Swertz; Damian Smedley; Michael Gruenberger; Jonathan B. L. Bard; Klaus Schughart; Nadia A. Rosenthal; John M. Hancock; Paul N. Schofield; George Kollias; Vassilis Aidinis (Database J. Biol. Databases Curation, 2010)

The Vertebrate Bridging Ontology (VBO). - Ravensara S. Travillian; James Malone; Chao Pang; John M. Hancock; Peter W. H. Holland; Paul N. Schofield; Helen E. Parkinson (ICBO, 2011)

Towards BioDBcore: a community-defined information specification for biological databases. - Pascale Gaudet; Amos Bairoch; Dawn Field; Susanna-Assunta Sansone; Chris F. Taylor; Teresa K. Attwood; Alex Bateman; Judith A. Blake; Carol J. Bult; J. Michael Cherry; Rex L. Chisholm; Guy Cochrane; et al. (Database J. Biol. Databases Curation, 2011)

A common layer of interoperability for biomedical ontologies based on OWL EL. - Robert Hoehndorf; Michel Dumontier; Anika Oellrich; Sarala M. Wimalaratne; Dietrich Rebholz-Schuhmann; Paul N. Schofield; Georgios V. Gkoutos (Bioinform., 2011)

Anatomy ontologies and potential users: bridging the gap. - Ravensara S. Travillian; Tomasz Adamusiak; Tony Burdett; Michael Gruenberger; John M. Hancock; Ann-Marie Mallon; James Malone; Paul N. Schofield; Helen E. Parkinson (J. Biomed. Semant., 2011)

Improving ontologies by automatic reasoning and evaluation of logical definitions. - Sebastian Köhler 001; Sebastian Bauer 002; Chris Mungall; Gabriele Carletti; Cynthia L. Smith; Paul N. Schofield; Georgios V. Gkoutos; Peter N. Robinson (BMC Bioinform., 2011)

Linking PharmGKB to Phenotype Studies and Animal Models of Disease for Drug Repurposing. - Robert Hoehndorf; Anika Oellrich; Dietrich Rebholz-Schuhmann; Paul N. Schofield; Georgios V. Gkoutos (Pacific Symposium on Biocomputing, 2012)

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference. - Pascale Gaudet; Cecilia N. Arighi; Frederic B. Bastian; Alex Bateman; Judith A. Blake; J. Michael Cherry; Peter D'Eustachio; Robert D. Finn; Michelle G. Giglio; Lynette Hirschman; Renate Kania; William Klimke; et al. (Database J. Biol. Databases Curation, 2012)

The Units Ontology: a tool for integrating units of measurement in science. - Georgios V. Gkoutos; Paul N. Schofield; Robert Hoehndorf (Database J. Biol. Databases Curation, 2012)

The mouse pathology ontology, MPATH; structure and applications. - Paul N. Schofield; John P. Sundberg; Beth A. Sundberg; Colin McKerlie; Georgios V. Gkoutos (J. Biomed. Semant., 2013)

Mouse model phenotypes provide information about human drug targets. - Robert Hoehndorf; Tanya Hiebert; Nigel W. Hardy; Paul N. Schofield; Georgios V. Gkoutos; Michel Dumontier (Bioinform., 2014)

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data. - Sebastian Köhler 001; Sandra C. Doelken; Christopher J. Mungall; Sebastian Bauer 002; Helen V. Firth; Isabelle Bailleul-Forestier; Graeme C. M. Black; Danielle L. Brown; Michael Brudno; Jennifer Campbell; David R. FitzPatrick; Janan T. Eppig; et al. (Nucleic Acids Res., 2014)

Using Aber-OWL for fast and scalable reasoning over BioPortal ontologies. - Luke T. Slater; Georgios V. Gkoutos; Paul N. Schofield; Robert Hoehndorf (ICBO, 2015)

AberOWL: an ontology portal with OWL EL reasoning. - Luke T. Slater; Georgios V. Gkoutos; Paul N. Schofield; Robert Hoehndorf (ICBO, 2015)

Experiences with Aber-OWL, an Ontology Repository with OWL EL Reasoning. - Luke T. Slater; Miguel Ángel Rodríguez-García; Keiron O'Shea; Paul N. Schofield; Georgios V. Gkoutos; Robert Hoehndorf (OWLED, 2015)

Visualising Ontologies with AberOWL. - Miguel Ángel Rodríguez-García; Luke T. Slater; Keiron O'Shea; Paul N. Schofield; Georgios V. Gkoutos; Robert Hoehndorf (SWAT4LS, 2015)

The role of ontologies in biological and biomedical research: a functional perspective. - Robert Hoehndorf; Paul N. Schofield; Georgios V. Gkoutos (Briefings Bioinform., 2015)

Similarity-based search of model organism, disease and drug effect phenotypes. - Robert Hoehndorf; Michael Gruenberger; Georgios V. Gkoutos; Paul N. Schofield (J. Biomed. Semant., 2015)

Aber-OWL: a framework for ontology-based data access in biology. - Robert Hoehndorf; Luke T. Slater; Paul N. Schofield; Georgios V. Gkoutos (BMC Bioinform., 2015)

Large-Scale Reasoning over Functions in Biomedical Ontologies. - Robert Hoehndorf; Liam Mencel; Georgios V. Gkoutos; Paul N. Schofield (FOIS, 2016)

Updates to the AberOWL Ontology Repository. - Miguel Ángel Rodríguez-García; Luke T. Slater; Imane Boudellioua; Paul N. Schofield; Georgios V. Gkoutos; Robert Hoehndorf (ICBO/BioCreative, 2016)

To MIREOT or not to MIREOT? A Case Study of the Impact of Using MIREOT in the Experimental Factor Ontology (EFO). - Luke T. Slater; Georgios V. Gkoutos; Paul N. Schofield; Robert Hoehndorf (ICBO/BioCreative, 2016)

DermO; an ontology for the description of dermatologic disease. - Hannah M. Fisher; Robert Hoehndorf; Bruno S. Bazelato; Soheil S. Dadras; Lloyd E. King; Georgios V. Gkoutos; John P. Sundberg; Paul N. Schofield (J. Biomed. Semant., 2016)

Using AberOWL for fast and scalable reasoning over BioPortal ontologies. - Luke T. Slater; Georgios V. Gkoutos; Paul N. Schofield; Robert Hoehndorf (J. Biomed. Semant., 2016)

Integrating phenotype ontologies with PhenomeNET. - Miguel Ángel Rodríguez-García; Georgios V. Gkoutos; Paul N. Schofield; Robert Hoehndorf (J. Biomed. Semant., 2017)

Semantic prioritization of novel causative genomic variants. - Imane Boudellioua; Rozaimi B. Mahamad Razali; Maxat Kulmanov; Yasmeen Hashish; Vladimir B. Bajic; Eva Goncalves-Serra; Nadia Schoenmakers; Georgios V. Gkoutos; Paul N. Schofield; Robert Hoehndorf (PLoS Comput. Biol., 2017)

The anatomy of phenotype ontologies: principles, properties and applications. - Georgios V. Gkoutos; Paul N. Schofield; Robert Hoehndorf (Briefings Bioinform., 2018)

Ontology-based validation and identification of regulatory phenotypes. - Maxat Kulmanov; Paul N. Schofield; Georgios V. Gkoutos; Robert Hoehndorf (Bioinform., 2018)

Survey on data management in radiation protection research. - Balázs G. Madas; Paul N. Schofield (CoRR, 2018)

DeepPVP: phenotype-based prioritization of causative variants using deep learning. - Imane Boudellioua; Maxat Kulmanov; Paul N. Schofield; Georgios V. Gkoutos; Robert Hoehndorf (BMC Bioinform., 2019)

Exploring Sentiment as a Potential Indicator of Bias in Disease Ontologies. - Luke T. Slater; John A. Williams 002; Paul N. Schofield; Georgios V. Gkoutos (BIBM, 2021)

Reuse of Design Pattern Measurements for Health Data. - Núria Queralt-Rosinach; Mark D. Wilkinson; Rajaram Kaliyaperumal; César Henrique Bernabé; Qinqin Long; Michel Dumontier; Paul N. Schofield; Marco Roos (JOWO, 2021)

Linking common human diseases to their phenotypes; development of a resource for human phenomics. - Senay Kafkas; Sara Althubaiti; Georgios V. Gkoutos; Robert Hoehndorf; Paul N. Schofield (J. Biomed. Semant., 2021)

Multi-faceted semantic clustering with text-derived phenotypes. - Luke T. Slater; John A. Williams 002; Andreas Karwath; Hilary Fanning; Simon Ball; Paul N. Schofield; Robert Hoehndorf; Georgios V. Gkoutos (Comput. Biol. Medicine, 2021)

Updating the CEMO ontology for future epidemiological challenges. - Núria Queralt-Rosinach; Paul N. Schofield; Marco Roos; Robert Hoehndorf (SWAT4HCLS, 2023)

Klarigi: Characteristic explanations for semantic biomedical data. - Luke T. Slater; John A. Williams 002; Paul N. Schofield; Sophie Russell; Samantha C. Pendleton; Andreas Karwath; Hilary Fanning; Simon Ball; Robert Hoehndorf; Georgios V. Gkoutos (Comput. Biol. Medicine, 2023)

Talking about diseases; developing a model of patient and public-prioritised disease phenotypes. - Karin Slater; Paul N. Schofield; James Wright; Paul Clift; Anushka Irani; William Bradlow; Furqan Aziz; Georgios V. Gkoutos (npj Digit. Medicine, 2024)

Causal knowledge graph analysis identifies adverse drug effects. - Sumyyah Toonsi; Paul N. Schofield; Robert Hoehndorf (CoRR, 2025)