Integrated annotation and analysis of genetic variants from next-generation sequencing studies with variant tools. - F. Anthony San Lucas; Gao T. Wang; Paul Scheet; Bo Peng (Bioinform., 2012)

Identification of Allelic Imbalance with a Statistical Model for Subtle Genomic Mosaicism. - Rui Xia; Selina Vattathil; Paul Scheet (PLoS Comput. Biol., 2014)

Rapid and powerful detection of subtle allelic imbalance from exome sequencing data with hapLOHseq. - F. Anthony San Lucas; Smruthy Sivakumar; Selina Vattathil; Jerry Fowler; Eduardo Vilar; Paul Scheet (Bioinform., 2016)

Strategies for identification of somatic variants using the Ion Torrent deep targeted sequencing platform. - Aditya Deshpande; Wenhua Lang; Tina McDowell; Smruthy Sivakumar; Jiexin Zhang 004; Jing Wang; F. Anthony San Lucas; Jerry Fowler; Humam Kadara; Paul Scheet (BMC Bioinform., 2018)

Directional allelic imbalance profiling and visualization from multi-sample data with RECUR. - Yasminka A Jakubek; F. Anthony San Lucas; Paul Scheet (Bioinform., 2019)

Chromosomal imbalances detected via RNA-sequencing in 28 cancers. - Zuhal Ozcan; Francis A. San Lucas; Justin W. Wong; Kyle Chang; Konrad H. Stopsack; Jerry Fowler; Yasminka A. Jakubek; Paul Scheet (Bioinform., 2022)