Decoupling feature propagation from the design of graph auto-encoders. - Paul Scherer; Helena Andrés-Terré; Pietro Liò; Mateja Jamnik (CoRR, 2019)

Learning distributed representations of graphs with Geo2DR. - Paul Scherer; Pietro Liò (CoRR, 2020)

Incorporating network based protein complex discovery into automated model construction. - Paul Scherer; Maja Trebacz; Nikola Simidjievski; Zohreh Shams; Helena Andrés-Terré; Pietro Liò; Mateja Jamnik (CoRR, 2020)

Using ontology embeddings for structural inductive bias in gene expression data analysis. - Maja Trebacz; Zohreh Shams; Mateja Jamnik; Paul Scherer; Nikola Simidjievski; Helena Andrés-Terré; Pietro Liò (CoRR, 2020)

PyTorch Geometric Temporal: Spatiotemporal Signal Processing with Neural Machine Learning Models. - Benedek Rozemberczki; Paul Scherer; Yixuan He; George Panagopoulos; Alexander Riedel; Maria Sinziana Astefanoaei; Oliver Kiss; Ferenc Béres; Guzmán López; Nicolas Collignon; Rik Sarkar (CIKM, 2021)

Chickenpox Cases in Hungary: a Benchmark Dataset for Spatiotemporal Signal Processing with Graph Neural Networks. - Benedek Rozemberczki; Paul Scherer; Oliver Kiss; Rik Sarkar; Tamas Ferenci (CoRR, 2021)

PyTorch Geometric Temporal: Spatiotemporal Signal Processing with Neural Machine Learning Models. - Benedek Rozemberczki; Paul Scherer; Yixuan He; George Panagopoulos; Maria Sinziana Astefanoaei; Oliver Kiss; Ferenc Béres; Nicolas Collignon; Rik Sarkar (CoRR, 2021)

Distributed Representations of Graphs for Drug Pair Scoring. - Paul Scherer; Pietro Liò; Mateja Jamnik (LoG, 2022)

Unsupervised construction of computational graphs for gene expression data with explicit structural inductive biases. - Paul Scherer; Maja Trebacz; Nikola Simidjievski; Ramón Viñas 001; Zohreh Shams; Helena Andrés-Terré; Mateja Jamnik; Pietro Liò (Bioinform., 2022)

PyRelationAL: A Library for Active Learning Research and Development. - Paul Scherer; Thomas Gaudelet; Alison Pouplin; Suraj M. S; Jyothish Soman; Lindsay Edwards; Jake P. Taylor-King (CoRR, 2022)

Discrete Lagrangian Neural Networks with Automatic Symmetry Discovery. - Yana Lishkova; Paul Scherer; Steffen Ridderbusch; Mateja Jamnik; Pietro Liò; Sina Ober-Blöbaum; Christian Offen (CoRR, 2022)

Pedal Me Bicycle Deliveries. - Benedek Rozemberczki; Paul Scherer; Yixuan He; George Panagopoulos; Maria Sinziana Astefanoaei; Oliver Kiss; Ferenc Béres; Nicolas Collignon; Rik Sarkar (UCI-MLR, 2023)